Basic Information
Locus ID:
COCNU_02G007650
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Short Name:
SERK1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 23300939 | 23321100 | + | COCNU_02G007650 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.33 | 68,279.20 Da | 44.34 | 95.78 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00560 | Leucine Rich Repeat | 161 | 177 | 1.5 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 20 | 60 | 8.6E-11 | IPR013210 |
| Pfam | PF00560 | Leucine Rich Repeat | 136 | 156 | 1.6 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 298 | 568 | 4.1E-44 | IPR000719 |
| SUPERFAMILY | SSF52058 | L domain-like | 24 | 198 | 3.4E-36 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 276 | 572 | 1.86E-78 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 374 | 591 | 2.6E-69 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 266 | 373 | 1.6E-40 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 19 | 206 | 1.5E-64 | IPR032675 |
| SMART | SM00220 | serkin_6 | 297 | 571 | 3.0E-32 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 297 | 584 | 36.541351 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 420 | 432 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 303 | 325 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G34210.1 | somatic embryogenesis receptor-like kinase 2. Plasma membrane LRR receptor-like serine threonine kinase expressed during embryogenesis in locules until stage 6 anthers, with higher expression in the tapetal cell layer. SERK1 and SERK2 receptor kinases function redundantly as an important control point for sporophytic development controlling male gametophyte production. | 0 |
| RefSeq | XP_010926235.1 | LRR receptor kinase BAK1 [Elaeis guineensis] | 0 |
| B8BB68 | LRR receptor kinase BAK1 OS=Oryza sativa subsp. indica OX=39946 GN=BAK1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8K0HZH1 | LRR receptor kinase BAK1 OS=Cocos nucifera OX=13894 GN=COCNU_02G007650 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology