Basic Information
Locus ID:
COCNU_02G006060
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
AMSH-like ubiquitin
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 17372680 | 17395938 | + | COCNU_02G006060 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.46 | 88,853.01 Da | 50.14 | 88.70 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08066 | MPN_AMSH_like | 616 | 798 | 1.23886E-106 | IPR044098 |
| CDD | cd08066 | MPN_AMSH_like | 337 | 458 | 5.40887E-76 | IPR044098 |
| Pfam | PF08969 | USP8 dimerisation domain | 10 | 104 | 1.4E-11 | IPR015063 |
| Pfam | PF01398 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 336 | 448 | 8.2E-15 | IPR000555 |
| Pfam | PF01398 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 615 | 727 | 8.2E-15 | IPR000555 |
| SUPERFAMILY | SSF102712 | JAB1/MPN domain | 616 | 754 | 4.32E-20 | - |
| SUPERFAMILY | SSF102712 | JAB1/MPN domain | 337 | 460 | 6.02E-18 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 602 | 798 | 2.8E-69 | - |
| Gene3D | G3DSA:1.20.58.80 | - | 3 | 127 | 1.2E-31 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 323 | 478 | 2.0E-51 | - |
| SMART | SM00232 | pad1_6 | 337 | 474 | 7.2E-16 | IPR000555 |
| SMART | SM00232 | pad1_6 | 616 | 751 | 1.2E-18 | IPR000555 |
| ProSiteProfiles | PS50249 | MPN domain profile. | 617 | 754 | 31.363159 | IPR037518 |
| ProSiteProfiles | PS50249 | MPN domain profile. | 338 | 475 | 30.411858 | IPR037518 |
| Coils | Coil | Coil | 91 | 111 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48790.1 | associated molecule with the SH3 domain of STAM 1. | 0 |
| RefSeq | XP_010926021.1 | AMSH-like ubiquitin thioesterase 1 isoform X2 [Elaeis guineensis] | 0 |
| Q8VYB5 | AMSH-like ubiquitin thioesterase 1 OS=Arabidopsis thaliana OX=3702 GN=AMSH1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8K0HYK4 | Putative AMSH-like ubiquitin thioesterase 1 OS=Cocos nucifera OX=13894 GN=COCNU_02G006060 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology