Basic Information
Locus ID:
COCNU_02G005450
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 15754305 | 15760890 | - | COCNU_02G005450 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.88 | 40,072.85 Da | 42.88 | 79.04 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 91 | 151 | 2.4E-6 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 82 | 161 | 2.44E-11 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 84 | 158 | 3.6E-10 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 89 | 158 | 2.6E-7 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 88 | 162 | 10.888906 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 343 | 364 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67950.1 | RNA-binding (RRM/RBD/RNP motifs) family protein. | 0 |
| RefSeq | XP_010926090.1 | binding partner of ACD11 1 isoform X2 [Elaeis guineensis] | 0 |
| Q9LFD5 | Binding partner of ACD11 1 OS=Arabidopsis thaliana OX=3702 GN=BPA1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8K0MWM5 | Binding partner of ACD11 1 OS=Cocos nucifera OX=13894 GN=COCNU_02G005450 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology