Basic Information
Locus ID:
COCNU_02G005180
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
DNA repair protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 14912786 | 14928993 | - | COCNU_02G005180 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.79 | 41,247.04 Da | 53.97 | 81.67 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14382 | UBA2_RAD23_plant | 341 | 383 | 2.16292E-24 | - |
| CDD | cd01805 | Ubl_Rad23 | 22 | 73 | 2.91251E-19 | - |
| CDD | cd14379 | UBA1_Rad23_plant | 154 | 203 | 1.19752E-29 | - |
| Pfam | PF00627 | UBA/TS-N domain | 345 | 380 | 1.9E-11 | IPR015940 |
| Pfam | PF00627 | UBA/TS-N domain | 161 | 198 | 1.0E-13 | IPR015940 |
| Pfam | PF09280 | XPC-binding domain | 264 | 320 | 3.3E-22 | IPR015360 |
| Pfam | PF00240 | Ubiquitin family | 22 | 75 | 3.3E-11 | IPR000626 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 261 | 325 | 1.83E-21 | IPR036353 |
| SUPERFAMILY | SSF46934 | UBA-like | 157 | 210 | 2.16E-11 | IPR009060 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 22 | 91 | 3.45E-15 | IPR029071 |
| SUPERFAMILY | SSF46934 | UBA-like | 329 | 387 | 7.05E-15 | IPR009060 |
| Gene3D | G3DSA:3.10.20.90 | - | 13 | 79 | 2.7E-18 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 153 | 203 | 8.9E-22 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 337 | 384 | 1.1E-22 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 254 | 320 | 2.9E-26 | IPR036353 |
| SMART | SM00165 | uba_6 | 160 | 200 | 5.5E-5 | IPR015940 |
| SMART | SM00727 | CBM | 262 | 305 | 1.1E-6 | IPR006636 |
| SMART | SM00165 | uba_6 | 345 | 382 | 5.0E-9 | IPR015940 |
| SMART | SM00213 | ubq_7 | 1 | 74 | 6.0E-9 | IPR000626 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 21 | 388 | 4.0E-108 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 342 | 383 | 14.812021 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 22 | 78 | 14.425412 | IPR000626 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 158 | 201 | 13.052933 | IPR015940 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 290 | 312 | 1.5E-34 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 371 | 386 | 1.5E-34 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 356 | 370 | 1.5E-34 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 339 | 355 | 1.5E-34 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 208 | 238 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 80 | 106 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 80 | 114 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G38470.1 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_010926135.1 | ubiquitin receptor RAD23d isoform X4 [Elaeis guineensis] | 0 |
| Q84L30 | Ubiquitin receptor RAD23d OS=Arabidopsis thaliana OX=3702 GN=RAD23D PE=1 SV=2 | 0 | |
| TrEMBL | A0A8K0HYL8 | Ubiquitin receptor RAD23 OS=Cocos nucifera OX=13894 GN=COCNU_02G005180 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology