Basic Information
Locus ID:
COCNU_02G001910
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 5767144 | 5767611 | + | COCNU_02G001910 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.44 | 16,025.78 Da | 41.98 | 68.64 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12906 | RING-variant domain | 97 | 140 | 2.0E-8 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 92 | 143 | 1.31E-8 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 90 | 147 | 3.0E-13 | IPR013083 |
| SMART | SM00744 | ringv_2 | 96 | 144 | 7.7E-8 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 89 | 155 | 13.93931 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G34200.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_010925609.1 | E3 ubiquitin-protein ligase MARCH11 isoform X1 [Elaeis guineensis] | 0 |
| TrEMBL | A0A8K0HYI6 | Putative E3 ubiquitin-protein ligase MARCH11 OS=Cocos nucifera OX=13894 GN=COCNU_02G001910 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology