Basic Information
Locus ID:
COCNU_01G021860
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
N-terminal domain of oxidoreductase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 116943112 | 116953827 | + | COCNU_01G021860 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.72 | 66,617.29 Da | 36.59 | 94.19 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 447 | 506 | 3.9E-7 | IPR001611 |
| Pfam | PF00107 | Zinc-binding dehydrogenase | 131 | 263 | 1.1E-20 | IPR013149 |
| Pfam | PF16884 | N-terminal domain of oxidoreductase | 15 | 94 | 8.7E-25 | IPR041694 |
| SUPERFAMILY | SSF52058 | L domain-like | 347 | 525 | 5.95E-29 | - |
| SUPERFAMILY | SSF50129 | GroES-like | 12 | 113 | 4.29E-25 | IPR011032 |
| SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 128 | 272 | 1.25E-31 | IPR036291 |
| Gene3D | G3DSA:3.40.50.720 | - | 109 | 275 | 1.1E-115 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 348 | 538 | 1.3E-44 | IPR032675 |
| Gene3D | G3DSA:3.90.180.10 | - | 4 | 297 | 1.1E-115 | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G65560.1 | Zinc-binding dehydrogenase family protein. | 0 |
| RefSeq | XP_029118867.1 | uncharacterized protein LOC105035869 [Elaeis guineensis] | 0 |
| Q9SLN8 | 2-alkenal reductase (NADP(+)-dependent) OS=Nicotiana tabacum OX=4097 GN=DBR PE=1 SV=1 | 0 | |
| TrEMBL | A0A8K0HX61 | Putative 2-alkenal reductase (NADP(+)-dependent) OS=Cocos nucifera OX=13894 GN=COCNU_01G021860 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 11 | jg16756, jg16757, jg16758, jg16759, jg17838, jg19809 ... |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_10153, gene_13582 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah000412, Ah005143 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_4g074560, BVRB_5g119000 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg17393, Sbi_jg30692, Sbi_jg58583, Sbi_jg62043 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg28444, Seu_jg657 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00005006, GOSA_00015546 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl24278, Sgl29453, Sgl55057, Sgl60307, Sgl60319 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000004129, gene:ENSEOMG00000011914 ... |
| Amaranthaceae | Chenopodium quinoa | 5 | CQ.Regalona.r1.4AG0002840, CQ.Regalona.r1.4BG0002980 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30025790, pistato.v30025800 |
| Apiaceae | Apium graveolens | 2 | Ag11G03059, Ag2G01205 |
| Arecaceae | Cocos nucifera | 3 | COCNU_01G021860, COCNU_01G021870, scaffold002973G000110 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103699321, gene-LOC103706061, gene-LOC103715226 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_02.501.V1.1, AsparagusV1_09.519.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri10G24842, Ftri12G25351, Ftri9G31259 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G48380.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10003825m.g.v1.0, Thhalv10015945m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g18730.v2.2 |
| Brassicaceae | Brassica nigra | 7 | BniB02g069530.2N, BniB03g023960.2N, BniB04g006010.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 3 | Ceq05G1234, Ceq06G0320, Ceq06G2273 |
| Casuarinaceae | Casuarina glauca | 3 | Cgl05G1241, Cgl06G0348, Cgl06G2385 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno07g11460 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g07200 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-6426 |
| Nitrariaceae | Nitraria sibirica | 5 | evm.TU.LG03.1812, evm.TU.LG03.874, evm.TU.LG04.2357 ... |
| Plantaginaceae | Plantago ovata | 2 | Pov_00036673, Pov_00036674 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb3G15845, Lb3G15847 |
| Poaceae | Echinochloa crus-galli | 7 | AH02.4147, AH04.727, BH04.768, CH02.2750, CH02.4196 ... |
| Poaceae | Eleusine coracana subsp. coracana | 7 | gene-QOZ80_1AG0042710, gene-QOZ80_1AG0042740 ... |
| Poaceae | Hordeum vulgare | 7 | HORVU.MOREX.r3.1HG0066190.1, HORVU.MOREX.r3.3HG0306330.1 ... |
| Poaceae | Lolium multiflorum | 10 | gene-QYE76_013236, gene-QYE76_013249, gene-QYE76_017956 ... |
| Poaceae | Oryza coarctata | 5 | Oco01G027020, Oco02G028110, Oco09G009680, Oco10G009810 ... |
| Poaceae | Oryza sativa | 6 | LOC_Os01g66740.1, LOC_Os01g66760.1, LOC_Os01g66820.1 ... |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_03G364500, gene-BS78_05G113600 ... |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0104030, Pt_Chr0104071, Pt_Chr0107760, Pt_Chr0505243 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr01G020490, Chr08G020420, Chr12G017560, Chr18G009410 ... |
| Poaceae | Thinopyrum elongatum | 8 | Tel1E01G428300, Tel2E01G597900, Tel3E01G548200 ... |
| Poaceae | Triticum dicoccoides | 14 | gene_TRIDC1AG038800, gene_TRIDC1BG044020 ... |
| Poaceae | Triticum aestivum | 30 | TraesCS1A02G259600.1, TraesCS1B02G269900.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb112380_P001, Zm00001eb288130_P001 ... |
| Poaceae | Zoysia japonica | 4 | nbis-gene-13938, nbis-gene-23880, nbis-gene-48235 ... |
| Poaceae | Zoysia macrostachya | 5 | Zma_g17713, Zma_g17716, Zma_g17719, Zma_g27198, Zma_g28249 |
| Portulacaceae | Portulaca oleracea | 9 | evm.TU.LG01.2375, evm.TU.LG02.1049, evm.TU.LG14.1544 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g05680 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_5_RagTag.1691, evm.TU.Scaffold_9_RagTag.1485 |
| Rhizophoraceae | Carallia pectinifolia | 5 | nbisL1-mrna-12187, nbisL1-mrna-12188, nbisL1-mrna-20642 ... |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-4167, nbisL1-mrna-8382 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-10832, nbisL1-mrna-10833, nbisL1-mrna-21474 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000003l.936, evm.TU.utg000006l.976 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-10509, nbisL1-mrna-13921, nbisL1-mrna-20890 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-15621, nbisL1-mrna-15622, nbisL1-mrna-4600 |
| Salicaceae | Populus euphratica | 4 | populus_peu06644, populus_peu20534, populus_peu23847 ... |
| Solanaceae | Lycium barbarum | 4 | gene-LOC132604312, gene-LOC132625734, gene-LOC132627098 ... |
| Solanaceae | Solanum chilense | 2 | SOLCI005023100, SOLCI005243000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107023385 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.28008_chr04_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G2982 |
| Zosteraceae | Zostera marina | 2 | Zosma04g16460.v3.1, Zosma05g01540.v3.1 |