Basic Information
Locus ID:
COCNU_01G020190
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Protein-only RNase P
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 110776127 | 110783185 | - | COCNU_01G020190 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.24 | 58,219.60 Da | 50.16 | 76.81 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18671 | PIN_PRORP-Zc3h12a-like | 342 | 464 | 4.49287E-61 | - |
| Pfam | PF17177 | Pentacotripeptide-repeat region of PRORP | 34 | 244 | 3.7E-81 | IPR033443 |
| Pfam | PF16953 | Protein-only RNase P | 284 | 510 | 1.5E-70 | IPR031595 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 42 | 513 | 1.2E-234 | IPR011990 |
| Gene3D | G3DSA:3.40.50.11980 | - | 302 | 476 | 1.2E-234 | - |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 156 | 190 | 9.328124 | IPR002885 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 42 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32230.1 | proteinaceous RNase P 1. RNase P able to cleave tRNA-like structures involved in the maturation of plant mitochondrial mRNAs. | 0 |
| RefSeq | XP_010911060.1 | proteinaceous RNase P 1, chloroplastic/mitochondrial [Elaeis guineensis] | 0 |
| Q66GI4 | Proteinaceous RNase P 1, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PRORP1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8K0HXP8 | ribonuclease P OS=Cocos nucifera OX=13894 GN=COCNU_01G020190 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology