Basic Information
Locus ID:
COCNU_01G020030
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Serine hydroxymethyltransferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 110191070 | 110193760 | + | COCNU_01G020030 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.95 | 27,256.01 Da | 39.02 | 79.71 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00464 | Serine hydroxymethyltransferase | 4 | 192 | 5.4E-68 | IPR039429 |
| SUPERFAMILY | SSF53383 | PLP-dependent transferases | 5 | 244 | 8.76E-73 | IPR015424 |
| Gene3D | G3DSA:3.90.1150.10 | Aspartate Aminotransferase, domain 1 | 94 | 245 | 6.4E-52 | IPR015422 |
| Gene3D | G3DSA:3.40.640.10 | - | 1 | 93 | 7.8E-35 | IPR015421 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 117 | 133 | 8.503359 | IPR001680 |
| ProSitePatterns | PS00096 | Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. | 12 | 28 | - | IPR019798 |
Gene Ontology
KEGG Pathway
Pathway:
ko00260 (Glycine, serine and threonine metabolism)
map00260 (Glycine, serine and threonine metabolism)
ko00460 (Cyanoamino acid metabolism)
map00460 (Cyanoamino acid metabolism)
ko00630 (Glyoxylate and dicarboxylate metabolism)
map00630 (Glyoxylate and dicarboxylate metabolism)
ko00670 (One carbon pool by folate)
map00670 (One carbon pool by folate)
ko00680 (Methane metabolism)
map00680 (Methane metabolism)
ko01100 (Metabolic pathways)
map01100 (Metabolic pathways)
ko01110 (Biosynthesis of secondary metabolites)
map01110 (Biosynthesis of secondary metabolites)
ko01120 (Microbial metabolism in diverse environments)
map01120 (Microbial metabolism in diverse environments)
ko01200 (Carbon metabolism)
map01200 (Carbon metabolism)
ko01230 (Biosynthesis of amino acids)
map01230 (Biosynthesis of amino acids)
ko01523 (Antifolate resistance)
map01523 (Antifolate resistance)
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G36370.1 | serine hydroxymethyltransferase 7. Encodes a putative serine hydroxymethyltransferase. | 0 |
| RefSeq | XP_008783361.1 | serine hydroxymethyltransferase 7-like [Phoenix dactylifera] | 0 |
| Q84WV0 | Serine hydroxymethyltransferase 7 OS=Arabidopsis thaliana OX=3702 GN=SHM7 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8K0HXM9 | glycine hydroxymethyltransferase OS=Cocos nucifera OX=13894 GN=COCNU_01G020030 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000000970 |
| Apiaceae | Apium graveolens | 1 | Ag6G02827 |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G020030 |
| Brassicaceae | Brassica nigra | 5 | BniB01g013650.2N, BniB04g036870.2N, BniB06g058710.2N ... |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G0209 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 3 | nbisL1-mrna-12324, nbisL1-mrna-12360, nbisL1-mrna-1654 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G16609 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0106080 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00002798 |