Basic Information
Locus ID:
COCNU_01G018760
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 104588428 | 104589675 | + | COCNU_01G018760 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.14 | 45,815.94 Da | 60.62 | 110.89 | 0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 10 | 53 | 3.55887E-23 | - |
| Pfam | PF04564 | U-box domain | 6 | 75 | 7.4E-23 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 99 | 392 | 9.6E-16 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 3 | 79 | 1.86E-29 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 95 | 392 | 1.0E-13 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 83 | 2.3E-30 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 9 | 73 | 1.4E-35 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 5 | 80 | 45.229832 | IPR003613 |
| Coils | Coil | Coil | 114 | 134 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35930.1 | plant U-box 23. Encodes a cytoplasmically localized U-box domain containing E3 ubiquitin ligase that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_010911942.1 | E3 ubiquitin-protein ligase PUB23 [Elaeis guineensis] | 0 |
| Q84TG3 | E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana OX=3702 GN=PUB23 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8K0MVS0 | RING-type E3 ubiquitin transferase OS=Cocos nucifera OX=13894 GN=COCNU_01G018760 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology