Basic Information
Locus ID:
COCNU_01G018300
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Short Name:
NTMC2T2.1
Description:
C2 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 101937082 | 101959034 | + | COCNU_01G018300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.40 | 57,919.10 Da | 29.78 | 105.41 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 229 | 312 | 4.28431E-13 | - |
| CDD | cd00030 | C2 | 389 | 488 | 2.3924E-29 | - |
| Pfam | PF00168 | C2 domain | 387 | 479 | 7.3E-26 | IPR000008 |
| Pfam | PF00168 | C2 domain | 227 | 312 | 8.3E-6 | IPR000008 |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 36 | 213 | 9.1E-17 | IPR039010 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 382 | 506 | 1.31E-32 | IPR035892 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 220 | 335 | 2.18E-16 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 365 | 505 | 1.8E-36 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 266 | 342 | 1.5E-8 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 225 | 265 | 2.6E-6 | IPR035892 |
| SMART | SM00239 | C2_3c | 388 | 486 | 4.9E-25 | IPR000008 |
| SMART | SM00239 | C2_3c | 228 | 309 | 0.1 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 32 | 214 | 27.692665 | IPR031468 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 368 | 487 | 21.408024 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 404 | 416 | 2.9E-7 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 430 | 443 | 2.9E-7 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 452 | 460 | 2.9E-7 | IPR000008 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05500.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. Encodes a endomembrane-localized synaptotagmin. Synaptotagmin family proteins are calcium sensors that regulate exocytosis in mammalian cells. | 0 |
| RefSeq | XP_029116885.1 | synaptotagmin-5-like [Elaeis guineensis] | 0 |
| Q8L706 | Synaptotagmin-5 OS=Arabidopsis thaliana OX=3702 GN=SYT5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8K0MVB7 | Synaptotagmin-5 OS=Cocos nucifera OX=13894 GN=COCNU_01G018300 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology