Basic Information
Locus ID:
COCNU_01G018290
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Short Name:
NTMC2T2.1
Description:
C2 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 101892265 | 101908952 | + | COCNU_01G018290 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.55 | 69,728.38 Da | 32.44 | 103.76 | 0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 324 | 415 | 4.21871E-23 | - |
| CDD | cd00030 | C2 | 492 | 588 | 1.15436E-21 | - |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 132 | 308 | 2.7E-13 | IPR039010 |
| Pfam | PF00168 | C2 domain | 322 | 415 | 3.0E-18 | IPR000008 |
| Pfam | PF00168 | C2 domain | 490 | 587 | 1.4E-26 | IPR000008 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 489 | 608 | 1.64E-32 | IPR035892 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 320 | 441 | 1.31E-26 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 472 | 608 | 5.0E-36 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 319 | 457 | 4.2E-26 | IPR035892 |
| SMART | SM00239 | C2_3c | 491 | 589 | 4.2E-22 | IPR000008 |
| SMART | SM00239 | C2_3c | 323 | 412 | 8.9E-18 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 303 | 413 | 13.262373 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 472 | 590 | 20.740463 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 127 | 309 | 29.587015 | IPR031468 |
| PRINTS | PR00360 | C2 domain signature | 533 | 546 | 4.2E-5 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 555 | 563 | 4.2E-5 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 507 | 519 | 4.2E-5 | IPR000008 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05500.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. Encodes a endomembrane-localized synaptotagmin. Synaptotagmin family proteins are calcium sensors that regulate exocytosis in mammalian cells. | 0 |
| RefSeq | XP_029116884.1 | synaptotagmin-5 isoform X2 [Elaeis guineensis] | 0 |
| Q8L706 | Synaptotagmin-5 OS=Arabidopsis thaliana OX=3702 GN=SYT5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8K0MVX6 | Synaptotagmin-5 OS=Cocos nucifera OX=13894 GN=COCNU_01G018290 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology