Basic Information
Locus ID:
COCNU_01G015670
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
C-terminal to LisH motif.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 57472520 | 57487735 | + | COCNU_01G015670 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.43 | 63,483.66 Da | 36.87 | 90.34 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 243 | 535 | 2.39424E-48 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 288 | 323 | 0.25 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 243 | 277 | 2.3E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 455 | 492 | 0.034 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 498 | 535 | 6.0E-8 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 242 | 535 | 6.41E-64 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 242 | 499 | 3.9E-58 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 500 | 554 | 3.7E-12 | IPR015943 |
| SMART | SM00320 | WD40_4 | 409 | 447 | 27.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 239 | 278 | 3.6E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 284 | 323 | 1.8E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 326 | 365 | 0.039 | IPR001680 |
| SMART | SM00320 | WD40_4 | 496 | 536 | 9.6E-12 | IPR001680 |
| SMART | SM00320 | WD40_4 | 451 | 493 | 1.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 367 | 407 | 71.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 503 | 545 | 14.652308 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 246 | 279 | 10.442869 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 291 | 327 | 10.100143 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 479 | 502 | 8.703868 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 21 | 53 | 7.831292 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 246 | 287 | 12.814306 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 54 | 111 | 9.035254 | IPR006595 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 503 | 538 | 11.629227 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 291 | 332 | 13.248743 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 265 | 279 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 265 | 279 | 1.0E-4 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 480 | 494 | 1.0E-4 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 523 | 537 | 1.0E-4 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08560.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_010943696.1 | WD repeat-containing protein 26 homolog [Elaeis guineensis] | 0 |
| Q9FNN2 | WD repeat-containing protein 26 homolog OS=Arabidopsis thaliana OX=3702 GN=WDR26 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8K0HWV5 | WD repeat-containing protein 26 OS=Cocos nucifera OX=13894 GN=COCNU_01G015670 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology