Basic Information
Locus ID:
COCNU_01G015400
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 54135859 | 54136617 | + | COCNU_01G015400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.40 | 29,032.30 Da | 63.19 | 76.94 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12678 | RING-H2 zinc finger domain | 195 | 246 | 1.7E-11 | IPR024766 |
| SUPERFAMILY | SSF57850 | RING/U-box | 206 | 251 | 5.42E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 173 | 250 | 3.0E-16 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 207 | 246 | 11.028731 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_038975401.1 | E3 ubiquitin-protein ligase Praja-1-like [Phoenix dactylifera] | 0 |
| TrEMBL | A0A8K0HVT4 | Putative E3 ubiquitin-protein ligase RING1-like OS=Cocos nucifera OX=13894 GN=COCNU_01G015400 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Arecaceae | Cocos nucifera | 2 | COCNU_01G015400, COCNU_01G015420 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC108511340, gene-LOC120106529 |