Basic Information
Locus ID:
COCNU_01G015350
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 53388650 | 53408866 | - | COCNU_01G015350 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.05 | 66,451.10 Da | 58.70 | 56.45 | -0.73 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16623 | RING-HC_RBR_TRIAD1_like | 134 | 184 | 1.18986E-13 | - |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 282 | 329 | 1.5E-9 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 203 | 265 | 5.0E-14 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 131 | 215 | 2.58E-19 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 284 | 332 | 1.74E-17 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 203 | 272 | 9.27E-13 | - |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 556 | 582 | 4.45E-6 | IPR036443 |
| Gene3D | G3DSA:1.20.120.1750 | - | 261 | 516 | 8.1E-86 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 550 | 583 | 2.6E-6 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 128 | 218 | 7.5E-19 | IPR013083 |
| SMART | SM00647 | ibrneu5 | 203 | 265 | 9.6E-24 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 269 | 339 | 0.037 | IPR002867 |
| SMART | SM00547 | zf_4 | 558 | 582 | 5.6E-6 | IPR001876 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 134 | 178 | 9.346889 | IPR001841 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 556 | 583 | 8.366031 | IPR001876 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 130 | 343 | 51.001518 | IPR044066 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 560 | 579 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 524 | 558 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 16 | 45 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 45 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 15 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G65430.1 | IBR domain-containing protein. | 0 |
| RefSeq | XP_010912117.1 | probable E3 ubiquitin-protein ligase ARI8 [Elaeis guineensis] | 0 |
| Q8W468 | Probable E3 ubiquitin-protein ligase ARI8 OS=Arabidopsis thaliana OX=3702 GN=ARI8 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8K0HVZ4 | RBR-type E3 ubiquitin transferase OS=Cocos nucifera OX=13894 GN=COCNU_01G015350 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology