Basic Information
Locus ID:
COCNU_01G013790
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Fasciclin-like arabinogalactan protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 42338284 | 42340312 | - | COCNU_01G013790 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.58 | 43,251.04 Da | 33.89 | 92.19 | 0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02469 | Fasciclin domain | 34 | 106 | 2.5E-5 | IPR000782 |
| Pfam | PF02469 | Fasciclin domain | 196 | 327 | 3.6E-14 | IPR000782 |
| SUPERFAMILY | SSF82153 | FAS1 domain | 181 | 328 | 1.26E-18 | IPR036378 |
| SUPERFAMILY | SSF82153 | FAS1 domain | 29 | 172 | 4.05E-16 | IPR036378 |
| Gene3D | G3DSA:2.30.180.10 | FAS1 domain | 166 | 328 | 3.2E-11 | IPR036378 |
| Gene3D | G3DSA:2.30.180.10 | FAS1 domain | 23 | 165 | 1.4E-8 | IPR036378 |
| SMART | SM00554 | fasc_3 | 59 | 174 | 0.49 | IPR000782 |
| SMART | SM00554 | fasc_3 | 223 | 328 | 7.3E-16 | IPR000782 |
| ProSiteProfiles | PS50213 | FAS1/BIgH3 domain profile. | 23 | 160 | 9.188695 | IPR000782 |
| ProSiteProfiles | PS50213 | FAS1/BIgH3 domain profile. | 184 | 325 | 12.333324 | IPR000782 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 330 | 394 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G12730.1 | FASCICLIN-like arabinogalactan 2. AF333971 Arabidopsis thaliana fasciclin-like arabinogalactan-protein 2 (Fla2) mRNA, complete cds | 0 |
| RefSeq | XP_010943291.1 | fasciclin-like arabinogalactan protein 2 [Elaeis guineensis] | 0 |
| Q9SU13 | Fasciclin-like arabinogalactan protein 2 OS=Arabidopsis thaliana OX=3702 GN=FLA2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8K0MVH6 | Fasciclin-like arabinogalactan protein 2 OS=Cocos nucifera OX=13894 GN=COCNU_01G013790 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology