Basic Information
Locus ID:
COCNU_01G013130
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Raffinose synthase or seed imbibition protein Sip1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 38934612 | 38939595 | - | COCNU_01G013130 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.71 | 82,961.23 Da | 28.89 | 82.48 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF05691 | Raffinose synthase or seed imbibition protein Sip1 | 7 | 737 | 5.7E-289 | IPR008811 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 199 | 534 | 1.52E-54 | IPR017853 |
| Gene3D | G3DSA:3.20.20.70 | Aldolase class I | 201 | 509 | 1.5E-17 | IPR013785 |
| ProSiteProfiles | PS50042 | cAMP/cGMP binding motif profile. | 620 | 698 | 7.4598 | IPR000595 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G55740.1 | seed imbibition 1. | 0 |
| RefSeq | XP_010912187.1 | probable galactinol--sucrose galactosyltransferase 1 [Elaeis guineensis] | 0 |
| Q84VX0 | Probable galactinol--sucrose galactosyltransferase 1 OS=Arabidopsis thaliana OX=3702 GN=RFS1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8K0HWD5 | galactinol--sucrose galactosyltransferase OS=Cocos nucifera OX=13894 GN=COCNU_01G013130 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology