Basic Information
Locus ID:
COCNU_01G013120
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Raffinose synthase or seed imbibition protein Sip1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 38881975 | 38887324 | - | COCNU_01G013120 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.81 | 82,347.52 Da | 30.93 | 81.72 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF05691 | Raffinose synthase or seed imbibition protein Sip1 | 7 | 730 | 0.0 | IPR008811 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 198 | 520 | 9.63E-58 | IPR017853 |
| Gene3D | G3DSA:3.20.20.70 | Aldolase class I | 194 | 498 | 2.0E-15 | IPR013785 |
| ProSiteProfiles | PS50042 | cAMP/cGMP binding motif profile. | 614 | 692 | 7.324 | IPR000595 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G55740.1 | seed imbibition 1. | 0 |
| RefSeq | XP_010912188.1 | probable galactinol--sucrose galactosyltransferase 1 [Elaeis guineensis] | 0 |
| Q84VX0 | Probable galactinol--sucrose galactosyltransferase 1 OS=Arabidopsis thaliana OX=3702 GN=RFS1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8K0HWA5 | galactinol--sucrose galactosyltransferase OS=Cocos nucifera OX=13894 GN=COCNU_01G013120 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology