Basic Information
Locus ID:
COCNU_01G012280
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
glycerophosphoryl diester phosphodiesterase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 35574379 | 35608801 | - | COCNU_01G012280 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.21 | 90,389.86 Da | 42.17 | 87.77 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08604 | GDPD_SHV3_repeat_2 | 358 | 714 | 1.54735E-151 | - |
| CDD | cd08603 | GDPD_SHV3_repeat_1 | 42 | 341 | 0.0 | - |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 49 | 336 | 2.0E-7 | IPR030395 |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 563 | 709 | 1.5E-12 | IPR030395 |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 363 | 506 | 1.0E-18 | IPR030395 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 557 | 714 | 1.91E-17 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 41 | 340 | 2.54E-48 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 357 | 498 | 4.19E-25 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 40 | 341 | 2.7E-37 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 356 | 715 | 1.9E-45 | IPR017946 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 358 | 715 | 31.81218 | IPR030395 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 42 | 342 | 33.687923 | IPR030395 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 769 | 790 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 769 | 784 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G55480.1 | SHV3-like 1. Glycerophosphoryl diester phosphodiesterase-like protein involved in cell wall cellulose accumulation and pectin linking. Impacts root hair, trichome and epidermal cell development. | 0 |
| RefSeq | XP_010913177.1 | glycerophosphodiester phosphodiesterase GDPDL3 isoform X1 [Elaeis guineensis] | 0 |
| Q9FJ62 | Glycerophosphodiester phosphodiesterase GDPDL4 OS=Arabidopsis thaliana OX=3702 GN=GDPDL4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8K0MV34 | glycerophosphodiester phosphodiesterase OS=Cocos nucifera OX=13894 GN=COCNU_01G012280 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology