Basic Information
Locus ID:
COCNU_01G011240
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Prokaryotic RING finger family 4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 31482655 | 31483293 | + | COCNU_01G011240 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.92 | 24,268.07 Da | 71.25 | 49.95 | -0.78 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16449 | RING-HC | 164 | 201 | 2.2166E-8 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 164 | 205 | 8.1E-11 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 163 | 208 | 8.72E-15 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 139 | 212 | 2.2E-14 | IPR013083 |
| SMART | SM00184 | ring_2 | 164 | 201 | 9.9E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 164 | 202 | 11.161508 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 179 | 188 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 27 | 54 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 36 | 50 | - | - |
| Coils | Coil | Coil | 133 | 153 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G22250.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_008803516.2 | E3 ubiquitin-protein ligase RNF26 [Phoenix dactylifera] | 0 |
| TrEMBL | A0A8K0MV85 | Polycomb group RING finger protein 6 OS=Cocos nucifera OX=13894 GN=COCNU_01G011240 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology