Basic Information
Locus ID:
COCNU_01G010590
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 29070632 | 29076263 | - | COCNU_01G010590 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.05 | 71,427.49 Da | 34.75 | 86.26 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 360 | 393 | 0.0044 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 243 | 577 | 1.19E-36 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 479 | 587 | 1.3E-9 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 223 | 478 | 1.8E-23 | IPR015943 |
| SMART | SM00320 | WD40_4 | 441 | 484 | 330.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 353 | 394 | 0.0061 | IPR001680 |
| SMART | SM00320 | WD40_4 | 234 | 273 | 0.034 | IPR001680 |
| SMART | SM00320 | WD40_4 | 397 | 438 | 0.022 | IPR001680 |
| SMART | SM00320 | WD40_4 | 487 | 527 | 1.3 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 2.3E-10 | IPR006595 |
| SMART | SM00667 | Lish | 4 | 36 | 3.5E-6 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 360 | 403 | 10.241105 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 12.042217 | IPR006595 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 10.730549 | IPR006594 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 381 | 395 | - | IPR019775 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80490.1 | TOPLESS-related 1. | 0 |
| RefSeq | XP_017699382.1 | topless-related protein 1-like isoform X3 [Phoenix dactylifera] | 0 |
| Q10NY2 | Protein TPR3 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8K0HVX1 | Topless-related protein 3-like OS=Cocos nucifera OX=13894 GN=COCNU_01G010590 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Suaeda glauca | 5 | Sgl13166, Sgl15271, Sgl18389, Sgl35793, Sgl63808 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.4BG0018880 |
| Anacardiaceae | Pistacia vera | 3 | pistato.v30080030, pistato.v30081240, pistato.v30099810 |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G010590 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_01.130.V1.1, AsparagusV1_03.1555.V1.1 ... |
| Poaceae | Sporobolus alterniflorus | 1 | Chr29G011090 |
| Poaceae | Zea mays | 1 | Zm00001eb019610_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-39020 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-22323 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132639592 |