Basic Information
Locus ID:
COCNU_01G007550
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
LysM domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 19733301 | 19736176 | - | COCNU_01G007550 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.88 | 67,651.73 Da | 42.44 | 85.16 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00118 | LysM | 168 | 211 | 3.58476E-8 | IPR018392 |
| Pfam | PF00069 | Protein kinase domain | 340 | 587 | 1.3E-37 | IPR000719 |
| Pfam | PF01476 | LysM domain | 169 | 212 | 6.7E-9 | IPR018392 |
| SUPERFAMILY | SSF54106 | LysM domain | 167 | 212 | 7.85E-7 | IPR036779 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 307 | 591 | 5.54E-64 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 290 | 386 | 2.4E-13 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 388 | 604 | 8.7E-53 | - |
| Gene3D | G3DSA:3.10.350.10 | LysM domain | 155 | 223 | 8.3E-11 | IPR036779 |
| SMART | SM00257 | LysM_2 | 168 | 212 | 6.5E-7 | IPR018392 |
| SMART | SM00257 | LysM_2 | 102 | 148 | 11.0 | IPR018392 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 312 | 599 | 33.488407 | IPR000719 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 167 | 211 | 12.48197 | IPR018392 |
| ProSiteProfiles | PS51257 | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 29 | 5.0 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 217 | 243 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 221 | 239 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G33580.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_010913816.1 | protein LYK5-like [Elaeis guineensis] | 0 |
| O22808 | Protein LYK5 OS=Arabidopsis thaliana OX=3702 GN=LYK5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8K0HUF7 | Protein LYK5-like OS=Cocos nucifera OX=13894 GN=COCNU_01G007550 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology