Basic Information
Locus ID:
COCNU_01G007040
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
glycerophosphoryl diester phosphodiesterase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 18306163 | 18327349 | - | COCNU_01G007040 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.45 | 83,030.89 Da | 39.99 | 94.62 | 0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08603 | GDPD_SHV3_repeat_1 | 50 | 348 | 4.06752E-167 | - |
| CDD | cd08604 | GDPD_SHV3_repeat_2 | 365 | 665 | 4.56826E-162 | - |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 370 | 661 | 1.0E-38 | IPR030395 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 49 | 348 | 4.19E-38 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 364 | 663 | 2.88E-49 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 363 | 665 | 3.5E-52 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 48 | 349 | 5.2E-30 | IPR017946 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 365 | 666 | 34.719177 | IPR030395 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 50 | 349 | 29.546673 | IPR030395 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 720 | 744 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G55480.1 | SHV3-like 1. Glycerophosphoryl diester phosphodiesterase-like protein involved in cell wall cellulose accumulation and pectin linking. Impacts root hair, trichome and epidermal cell development. | 0 |
| RefSeq | XP_010913956.1 | glycerophosphodiester phosphodiesterase GDPDL4 [Elaeis guineensis] | 0 |
| Q9FJ62 | Glycerophosphodiester phosphodiesterase GDPDL4 OS=Arabidopsis thaliana OX=3702 GN=GDPDL4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8K0MUT6 | glycerophosphodiester phosphodiesterase OS=Cocos nucifera OX=13894 GN=COCNU_01G007040 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology