Basic Information
Locus ID:
COCNU_01G006900
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
High mobility group B protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 17847116 | 17855553 | + | COCNU_01G006900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.82 | 35,882.60 Da | 55.55 | 69.35 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01390 | HMGB-UBF_HMG-box | 262 | 313 | 4.6534E-7 | - |
| CDD | cd16872 | ARID_HMGB9-like | 43 | 128 | 2.28585E-46 | - |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 47 | 128 | 2.9E-17 | IPR001606 |
| SUPERFAMILY | SSF47095 | HMG-box | 247 | 313 | 5.76E-9 | IPR036910 |
| SUPERFAMILY | SSF46774 | ARID-like | 38 | 137 | 1.31E-28 | IPR036431 |
| Gene3D | G3DSA:1.10.150.60 | - | 33 | 145 | 1.1E-27 | IPR036431 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 246 | 320 | 8.9E-8 | IPR036910 |
| SMART | SM01014 | ARID_2 | 38 | 128 | 9.0E-27 | - |
| SMART | SM00501 | bright_3 | 42 | 133 | 1.1E-28 | IPR001606 |
| ProSiteProfiles | PS51011 | ARID domain profile. | 41 | 132 | 25.8281 | IPR001606 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 166 | 196 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 169 | 192 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04880.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_010914001.1 | high mobility group B protein 15 [Elaeis guineensis] | 0 |
| Q9MAT6 | High mobility group B protein 15 OS=Arabidopsis thaliana OX=3702 GN=HMGB15 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8K0MU91 | High mobility group B protein 15 OS=Cocos nucifera OX=13894 GN=COCNU_01G006900 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology