Basic Information
Locus ID:
COCNU_01G006310
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Short Name:
UPL1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 16407880 | 16439422 | + | COCNU_01G006310 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.42 | 532,797.69 Da | 46.11 | 92.10 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14327 | UBA_atUPL1_2_like | 1285 | 1322 | 1.07211E-14 | - |
| CDD | cd00078 | HECTc | 3400 | 3754 | 5.70074E-151 | IPR000569 |
| Pfam | PF13041 | PPR repeat family | 4457 | 4506 | 1.5E-10 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 4673 | 4716 | 1.1E-8 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 4562 | 4609 | 1.2E-7 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 4352 | 4400 | 5.7E-12 | IPR002885 |
| Pfam | PF12854 | PPR repeat | 4103 | 4133 | 6.8E-8 | IPR002885 |
| Pfam | PF06012 | Domain of Unknown Function (DUF908) | 195 | 353 | 1.4E-25 | IPR010309 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 3451 | 3756 | 1.8E-88 | IPR000569 |
| Pfam | PF14377 | Ubiquitin binding region | 2674 | 2703 | 8.1E-9 | IPR025527 |
| Pfam | PF14377 | Ubiquitin binding region | 2754 | 2784 | 9.4E-8 | IPR025527 |
| Pfam | PF06012 | Domain of Unknown Function (DUF908) | 76 | 134 | 2.5E-13 | IPR010309 |
| Pfam | PF13041 | PPR repeat family | 3966 | 4015 | 2.7E-18 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 4281 | 4330 | 7.2E-13 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 4216 | 4240 | 0.046 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 4636 | 4664 | 0.17 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 4250 | 4278 | 0.0023 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 4531 | 4559 | 0.11 | IPR002885 |
| Pfam | PF00627 | UBA/TS-N domain | 1283 | 1319 | 1.2E-8 | IPR015940 |
| Pfam | PF01535 | PPR repeat | 4424 | 4451 | 0.073 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 3866 | 3894 | 0.0083 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 3897 | 3944 | 6.8E-9 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 4143 | 4190 | 3.6E-11 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 4738 | 4784 | 4.1E-15 | IPR002885 |
| Pfam | PF06025 | Domain of Unknown Function (DUF913) | 413 | 775 | 1.1E-83 | IPR010314 |
| Pfam | PF13041 | PPR repeat family | 4036 | 4085 | 1.9E-16 | IPR002885 |
| Pfam | PF14377 | Ubiquitin binding region | 2716 | 2745 | 5.9E-11 | IPR025527 |
| SUPERFAMILY | SSF48371 | ARM repeat | 73 | 2175 | 1.28E-11 | IPR016024 |
| SUPERFAMILY | SSF46934 | UBA-like | 1264 | 1329 | 7.49E-14 | IPR009060 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 3386 | 3754 | 2.09E-121 | IPR035983 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 4546 | 4687 | 4.6E-27 | IPR011990 |
| Gene3D | G3DSA:6.10.250.1630 | - | 2713 | 2749 | 1.0E-6 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 4209 | 4346 | 7.1E-34 | IPR011990 |
| Gene3D | G3DSA:1.10.8.10 | - | 1281 | 1354 | 6.2E-17 | - |
| Gene3D | G3DSA:3.30.2160.10 | Hect, E3 ligase catalytic domain | 3522 | 3606 | 1.7E-92 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 4347 | 4417 | 2.1E-12 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 4135 | 4208 | 1.8E-17 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 3770 | 3907 | 2.8E-12 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 4433 | 4545 | 3.1E-25 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 3908 | 4018 | 1.1E-32 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 4019 | 4134 | 2.3E-37 | IPR011990 |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 3372 | 3639 | 1.7E-92 | - |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 3643 | 3761 | 9.8E-47 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 4688 | 4839 | 1.2E-28 | IPR011990 |
| SMART | SM00165 | uba_6 | 1283 | 1321 | 4.9E-11 | IPR015940 |
| SMART | SM00119 | hect_3 | 3419 | 3762 | 3.0E-156 | IPR000569 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 4354 | 4387 | 3.0E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 4074 | 4108 | 1.8E-9 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 4601 | 4632 | 2.5E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 4109 | 4142 | 1.8E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 4215 | 4242 | 5.3E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 4004 | 4038 | 3.2E-6 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 4461 | 4490 | 1.6E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 3969 | 4003 | 7.6E-7 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 4496 | 4528 | 1.6E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 3935 | 3968 | 8.5E-8 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 4673 | 4703 | 3.4E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 4144 | 4178 | 7.2E-7 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 3866 | 3897 | 3.6E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 4179 | 4212 | 1.2E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 4040 | 4073 | 6.2E-9 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 4740 | 4769 | 2.1E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 4424 | 4458 | 0.001 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 4284 | 4318 | 2.1E-7 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 4250 | 4283 | 3.1E-6 | IPR002885 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 3421 | 3762 | 105.550171 | IPR000569 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 3862 | 3896 | 10.413293 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 4493 | 4527 | 10.270796 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 4668 | 4702 | 11.070971 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 4633 | 4667 | 9.032168 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 4317 | 4351 | 9.152743 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 3967 | 4001 | 12.210946 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 4037 | 4071 | 13.120733 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 4387 | 4421 | 10.029647 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 4528 | 4562 | 10.402331 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 4107 | 4141 | 10.665402 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 4177 | 4211 | 11.936913 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 3932 | 3966 | 12.846701 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 4563 | 4597 | 8.780059 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 4142 | 4176 | 11.509422 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 4002 | 4036 | 11.640958 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 4598 | 4632 | 10.599635 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 4703 | 4737 | 8.681407 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 4458 | 4492 | 10.687325 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 4422 | 4457 | 9.481582 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 4352 | 4386 | 11.070971 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 4247 | 4281 | 11.761533 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 4282 | 4316 | 11.531345 | IPR002885 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 1328 | 1347 | 8.97509 | IPR003903 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 1281 | 1322 | 15.510838 | IPR015940 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 4072 | 4106 | 13.109773 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 4738 | 4772 | 12.068449 | IPR002885 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 3066 | 3099 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2643 | 2682 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1703 | 1732 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2143 | 2174 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 3060 | 3099 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1789 | 1807 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2069 | 2103 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2079 | 2103 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1501 | 1540 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1501 | 1535 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1782 | 1807 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2647 | 2682 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1703 | 1719 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2590 | 2616 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2591 | 2611 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2149 | 2174 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2982 | 3009 | - | - |
| Coils | Coil | Coil | 3741 | 3761 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G55860.1 | ubiquitin-protein ligase 1. encodes a ubiquitin-protein ligase containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis. | 0 |
| RefSeq | XP_010942601.1 | E3 ubiquitin-protein ligase UPL1 isoform X1 [Elaeis guineensis] | 0 |
| Q8GY23 | E3 ubiquitin-protein ligase UPL1 OS=Arabidopsis thaliana OX=3702 GN=UPL1 PE=1 SV=3 | 0 | |
| TrEMBL | A0A8K0MUC4 | HECT-type E3 ubiquitin transferase OS=Cocos nucifera OX=13894 GN=COCNU_01G006310 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg21280, jg21614, jg22646 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_1154, gene_12129 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah009079, Ah023597 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_1g005440, BVRB_4g090620 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg18534, Sbi_jg28955, Sbi_jg2982, Sbi_jg36934 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg4811, Seu_jg6898 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00000946, GOSA_00017313 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl11833, Sgl15930, Sgl23580, Sgl23581, Sgl28781 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000011427, gene:ENSEOMG00000015904 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.1AG0009790, CQ.Regalona.r1.1BG0015970 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30042170 |
| Apiaceae | Apium graveolens | 3 | Ag10G02843, Ag2G01711, Ag4G01891 |
| Arecaceae | Cocos nucifera | 4 | COCNU_01G006310, COCNU_02G014510, COCNU_11G011420 ... |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103702442, gene-LOC103710828, gene-LOC103721479 ... |
| Asparagaceae | Asparagus officinalis | 5 | AsparagusV1_01.3576.V1.1, AsparagusV1_01.3578.V1.1 ... |
| Asteraceae | Flaveria trinervia | 2 | Ftri10G09513, Ftri7G04341 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G55860.1, AT1G70320.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10011171m.g.v1.0, Thhalv10011172m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g41460.v2.2, Sp6g10940.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB04g019570.2N, BniB04g019580.2N, BniB05g058900.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq01G1493, Ceq03G1051 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl01G1657, Cgl03G1133 |
| Cymodoceaceae | Cymodocea nodosa | 3 | gene.Cymno10g07430, gene.Cymno14g08200, gene.Cymno18g05190 |
| Dunaliellaceae | Dunaliella salina | 4 | Dusal.0006s00003.v1.0, Dusal.0006s00007.v1.0 ... |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g11030 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-1803, nbisL1-mrna-9038 |
| Nitrariaceae | Nitraria sibirica | 3 | evm.TU.LG05.2045, evm.TU.LG06.244, evm.TU.LG09.1154 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00037172, Pov_00037932 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb2G11873, Lb4G23021, Lb4G23023 |
| Poaceae | Echinochloa crus-galli | 7 | AH03.1323, AH03.1324, AH05.3344, BH03.1456, BH05.3353 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_5AG0388780, gene-QOZ80_5BG0435490 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0452860.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_002392, gene-QYE76_002393 |
| Poaceae | Oryza coarctata | 4 | Oco17G000920, Oco18G000990, Oco23G005360, Oco24G005230 |
| Poaceae | Oryza sativa | 2 | LOC_Os09g07900.1, LOC_Os12g24080.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_K086400 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr04G014830, Chr06G015240, Chr10G003670, Chr11G015210 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G211200 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC2AG036140, gene_TRIDC5AG020600 ... |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G121600.1, TraesCS5B02G112800.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb094520_P002, Zm00001eb133420_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-12544 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g25774 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG02.609, evm.TU.LG04.1615, evm.TU.LG09.2070 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc03g08450, gene.Posoc06g13710 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_7_RagTag.64, evm.TU.Scaffold_7_RagTag.898 ... |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-19367, nbisL1-mrna-19688, nbisL1-mrna-9401 |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-4015, nbisL1-mrna-4933, nbisL1-mrna-9737 |
| Rhizophoraceae | Ceriops zippeliana | 6 | nbisL1-mrna-20564, nbisL1-mrna-20565, nbisL1-mrna-22342 ... |
| Rhizophoraceae | Kandelia candel | 3 | evm.TU.utg000002l.693, evm.TU.utg000018l.231 ... |
| Rhizophoraceae | Kandelia obovata | 3 | Maker00003277, Maker00010644, Maker00010697 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-11491, nbisL1-mrna-13070, nbisL1-mrna-7997 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-10148, nbisL1-mrna-17060, nbisL1-mrna-22585 |
| Salicaceae | Populus euphratica | 5 | populus_peu00891, populus_peu00892, populus_peu00893 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132616848, gene-LOC132627653 |
| Solanaceae | Solanum chilense | 2 | SOLCI000395700, SOLCI002308300 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107017094, gene-LOC107025338 |
| Tamaricaceae | Reaumuria soongarica | 3 | gene_13076, gene_17872, gene_3887 |
| Tamaricaceae | Tamarix chinensis | 3 | TC05G2598, TC06G0522, TC10G2282 |
| Zosteraceae | Zostera marina | 2 | Zosma03g00180.v3.1, Zosma05g30720.v3.1 |