Basic Information
Locus ID:
COCNU_01G006180
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Fasciclin-like arabinogalactan protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 16050344 | 16052097 | - | COCNU_01G006180 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.60 | 43,339.25 Da | 41.02 | 95.27 | 0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02469 | Fasciclin domain | 41 | 136 | 4.2E-7 | IPR000782 |
| Pfam | PF02469 | Fasciclin domain | 204 | 335 | 7.3E-15 | IPR000782 |
| SUPERFAMILY | SSF82153 | FAS1 domain | 187 | 336 | 2.22E-19 | IPR036378 |
| SUPERFAMILY | SSF82153 | FAS1 domain | 36 | 182 | 7.46E-19 | IPR036378 |
| Gene3D | G3DSA:2.30.180.10 | FAS1 domain | 30 | 167 | 2.5E-10 | IPR036378 |
| Gene3D | G3DSA:2.30.180.10 | FAS1 domain | 179 | 336 | 1.1E-11 | IPR036378 |
| SMART | SM00554 | fasc_3 | 66 | 182 | 0.27 | IPR000782 |
| SMART | SM00554 | fasc_3 | 231 | 336 | 2.6E-19 | IPR000782 |
| ProSiteProfiles | PS50213 | FAS1/BIgH3 domain profile. | 30 | 179 | 11.047928 | IPR000782 |
| ProSiteProfiles | PS50213 | FAS1/BIgH3 domain profile. | 192 | 333 | 11.529951 | IPR000782 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 356 | 388 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G12730.1 | FASCICLIN-like arabinogalactan 2. AF333971 Arabidopsis thaliana fasciclin-like arabinogalactan-protein 2 (Fla2) mRNA, complete cds | 0 |
| RefSeq | XP_010942271.1 | fasciclin-like arabinogalactan protein 2 [Elaeis guineensis] | 0 |
| Q9SU13 | Fasciclin-like arabinogalactan protein 2 OS=Arabidopsis thaliana OX=3702 GN=FLA2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8K0HUG2 | Fasciclin-like arabinogalactan protein 2 OS=Cocos nucifera OX=13894 GN=COCNU_01G006180 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology