Basic Information
Locus ID:
COCNU_01G005420
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Glyco_18
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 14086492 | 14087796 | - | COCNU_01G005420 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.71 | 46,868.12 Da | 37.82 | 74.52 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02879 | GH18_plant_chitinase_class_V | 59 | 399 | 7.89323E-134 | - |
| Pfam | PF00704 | Glycosyl hydrolases family 18 | 64 | 393 | 2.8E-71 | IPR001223 |
| SUPERFAMILY | SSF54556 | Chitinase insertion domain | 299 | 364 | 2.11E-10 | IPR029070 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 64 | 395 | 1.22E-69 | IPR017853 |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 80 | 393 | 1.1E-100 | - |
| Gene3D | G3DSA:3.10.50.10 | - | 298 | 364 | 1.1E-100 | IPR029070 |
| SMART | SM00636 | 2g34 | 61 | 393 | 1.5E-87 | IPR011583 |
| ProSiteProfiles | PS51910 | Glycosyl hydrolases family 18 (GH18) domain profile. | 61 | 409 | 65.16954 | IPR001223 |
| ProSitePatterns | PS01095 | Glycosyl hydrolases family 18 (GH18) active site signature. | 168 | 176 | - | IPR001579 |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19810.1 | Glycosyl hydrolase family protein with chitinase insertion domain. | 0 |
| RefSeq | XP_010942132.1 | nod factor hydrolase protein 1 [Elaeis guineensis] | 0 |
| U5N4E3 | Nod factor hydrolase protein 1 OS=Medicago truncatula OX=3880 GN=NFH1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8K0MUI5 | Nod factor hydrolase protein 1 OS=Cocos nucifera OX=13894 GN=COCNU_01G005420 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology