Basic Information
Locus ID:
COCNU_01G005410
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Glyco_18
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 14059385 | 14061158 | - | COCNU_01G005410 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.39 | 48,513.88 Da | 50.60 | 77.57 | 0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02879 | GH18_plant_chitinase_class_V | 99 | 432 | 5.19274E-131 | - |
| Pfam | PF00704 | Glycosyl hydrolases family 18 | 112 | 426 | 2.2E-70 | IPR001223 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 108 | 428 | 1.37E-67 | IPR017853 |
| SUPERFAMILY | SSF54556 | Chitinase insertion domain | 332 | 397 | 3.66E-11 | IPR029070 |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 113 | 426 | 5.1E-103 | - |
| Gene3D | G3DSA:3.10.50.10 | - | 331 | 397 | 5.1E-103 | IPR029070 |
| SMART | SM00636 | 2g34 | 98 | 426 | 3.7E-86 | IPR011583 |
| ProSiteProfiles | PS51910 | Glycosyl hydrolases family 18 (GH18) domain profile. | 98 | 439 | 62.285217 | IPR001223 |
| ProSitePatterns | PS01095 | Glycosyl hydrolases family 18 (GH18) active site signature. | 201 | 209 | - | IPR001579 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 76 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 17 | 76 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19810.1 | Glycosyl hydrolase family protein with chitinase insertion domain. | 0 |
| RefSeq | XP_010942288.1 | nod factor hydrolase protein 1 [Elaeis guineensis] | 0 |
| U5N4E3 | Nod factor hydrolase protein 1 OS=Medicago truncatula OX=3880 GN=NFH1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8K0MU92 | Nod factor hydrolase protein 1 OS=Cocos nucifera OX=13894 GN=COCNU_01G005410 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology