Basic Information
Locus ID:
COCNU_01G005200
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
AT hook motif family protein, expressed
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 13447381 | 13468982 | - | COCNU_01G005200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.84 | 106,943.70 Da | 52.33 | 65.85 | -0.81 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF48371 | ARM repeat | 25 | 216 | 1.36E-7 | IPR016024 |
| SUPERFAMILY | SSF63748 | Tudor/PWWP/MBT | 678 | 723 | 1.43E-6 | - |
| Gene3D | G3DSA:2.30.30.140 | - | 679 | 727 | 1.3E-10 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 476 | 491 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 802 | 816 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 388 | 415 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 347 | 629 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 416 | 475 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 748 | 768 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 579 | 618 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 353 | 374 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 544 | 578 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 748 | 979 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 817 | 973 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G31880.2 | 0 | |
| RefSeq | XP_010942109.1 | uncharacterized abhydrolase domain-containing protein DDB_G0269086 isoform X1 [Elaeis guineensis] | 0 |
| Q8GUP3 | Sister chromatid cohesion protein PDS5 homolog C OS=Arabidopsis thaliana OX=3702 GN=PDS5C PE=1 SV=1 | 0 | |
| TrEMBL | A0A8K0HTW2 | Sister chromatid cohesion PDS5-like protein OS=Cocos nucifera OX=13894 GN=COCNU_01G005200 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology