Basic Information
Locus ID:
COCNU_01G004360
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 11126590 | 11136949 | - | COCNU_01G004360 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.68 | 53,446.86 Da | 46.68 | 85.46 | 0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 222 | 275 | 3.9E-7 | IPR020683 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 88 | 207 | 2.3E-16 | IPR020683 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 20 | 81 | 8.4E-8 | IPR020683 |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 20 | 275 | 2.01E-51 | IPR036770 |
| SUPERFAMILY | SSF57850 | RING/U-box | 319 | 375 | 2.58E-7 | - |
| Gene3D | G3DSA:1.25.40.20 | - | 158 | 288 | 1.6E-26 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 11 | 143 | 1.2E-32 | IPR036770 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 304 | 383 | 9.7E-6 | IPR013083 |
| SMART | SM00248 | ANK_2a | 50 | 79 | 4.0E-5 | IPR002110 |
| SMART | SM00184 | ring_2 | 320 | 369 | 0.0052 | IPR001841 |
| SMART | SM00248 | ANK_2a | 222 | 251 | 6.0E-4 | IPR002110 |
| SMART | SM00248 | ANK_2a | 117 | 147 | 0.96 | IPR002110 |
| SMART | SM00248 | ANK_2a | 83 | 112 | 0.012 | IPR002110 |
| SMART | SM00248 | ANK_2a | 179 | 208 | 4.9E-5 | IPR002110 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 320 | 370 | 9.568184 | IPR001841 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 222 | 254 | 11.43405 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 222 | 253 | 10.232388 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 179 | 211 | 12.66271 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 117 | 138 | 9.728291 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 83 | 115 | 9.75132 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 117 | 138 | 9.75132 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 50 | 82 | 13.19691 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 179 | 207 | 12.142647 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 83 | 114 | 8.667035 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 50 | 81 | 12.301834 | - |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 335 | 344 | - | IPR017907 |
| PRINTS | PR01415 | Ankyrin repeat signature | 180 | 195 | 4.2E-5 | IPR002110 |
| PRINTS | PR01415 | Ankyrin repeat signature | 238 | 252 | 4.2E-5 | IPR002110 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G57740.1 | XB3 ortholog 2 in Arabidopsis thaliana. ubiquitin ligase | 0 |
| RefSeq | XP_010914066.1 | probable E3 ubiquitin-protein ligase XBOS32 [Elaeis guineensis] | 0 |
| Q6KAE5 | Probable E3 ubiquitin-protein ligase XBOS32 OS=Oryza sativa subsp. japonica OX=39947 GN=XBOS32 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8K0MU57 | E3 ubiquitin-protein ligase XBAT32 OS=Cocos nucifera OX=13894 GN=COCNU_01G004360 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology