Basic Information
Locus ID:
COCNU_01G002430
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Short Name:
TIR1
Description:
Transport inhibitor response 1-like protein Os05g0150500
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 5553083 | 5558169 | - | COCNU_01G002430 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.25 | 63,829.06 Da | 51.17 | 96.36 | 0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 68 | 114 | 9.9E-23 | IPR041101 |
| Pfam | PF18511 | F-box | 10 | 49 | 9.8E-16 | IPR041567 |
| SUPERFAMILY | SSF81383 | F-box domain | 9 | 43 | 3.66E-6 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 73 | 535 | 5.18E-33 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 48 | 580 | 3.2E-169 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 7 | 47 | 1.2E-15 | - |
| SMART | SM00367 | LRR_CC_2 | 315 | 338 | 340.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 106 | 130 | 190.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 432 | 455 | 200.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 372 | 396 | 4.2 | IPR006553 |
| SMART | SM00256 | fbox_2 | 11 | 52 | 2.5E-4 | IPR001810 |
| SMART | SM00367 | LRR_CC_2 | 481 | 505 | 21.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 131 | 156 | 24.0 | IPR006553 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62980.1 | F-box/RNI-like superfamily protein. Encodes an auxin receptor that mediates auxin-regulated transcription. It contains leucine-rich repeats and an F-box and interacts with ASK1, ASK2 and AtCUL1 to form SCF-TIR1, an SCF ubiquitin ligase complex. Related to yeast Grr1p and human SKP2 proteins, involved in ubiquitin-mediated processes. Required for normal response to auxin and repressed in response to flagellin. As part of the SCF complex and in the presence of auxin, TIR1 interacts with Aux/IAA transcriptional repressor proteins and mediates their degradation. | 0 |
| RefSeq | XP_029116736.1 | transport inhibitor response 1-like protein Os05g0150500 [Elaeis guineensis] | 0 |
| Q0DKP3 | Transport inhibitor response 1-like protein Os05g0150500 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0150500 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8K0HTM3 | Transport inhibitor response 1-like protein OS=Cocos nucifera OX=13894 GN=COCNU_01G002430 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology