Basic Information
Locus ID:
COCNU_01G001480
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 3372879 | 3382721 | - | COCNU_01G001480 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.78 | 36,757.37 Da | 45.04 | 87.57 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17920 | DEXHc_RecQ | 148 | 326 | 1.80526E-93 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 156 | 327 | 3.3E-18 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 146 | 326 | 2.53E-35 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 119 | 332 | 4.7E-79 | IPR027417 |
| SMART | SM00487 | ultradead3 | 150 | 332 | 6.2E-21 | IPR014001 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 148 | 326 | 9.3E-73 | IPR004589 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 162 | 333 | 21.222813 | IPR014001 |
| ProSitePatterns | PS00690 | DEAH-box subfamily ATP-dependent helicases signature. | 277 | 286 | - | IPR002464 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 50 | 73 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 39 | 92 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G05740.1 | RECQ helicase l1. | 0 |
| RefSeq | XP_038970970.1 | ATP-dependent DNA helicase Q-like 1 [Phoenix dactylifera] | 0 |
| Q9FT74 | ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis thaliana OX=3702 GN=RECQL1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8K0MU41 | Putative ATP-dependent DNA helicase Q-like 1 OS=Cocos nucifera OX=13894 GN=COCNU_01G001480 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology