Basic Information
Locus ID:
COCNU_01G001180
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
PAPA-1-like conserved region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 2703264 | 2705799 | + | COCNU_01G001180 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.27 | 63,526.57 Da | 57.32 | 55.81 | -1.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04795 | PAPA-1-like conserved region | 450 | 529 | 5.5E-19 | IPR006880 |
| SMART | SM01406 | PAPA_1_2 | 450 | 530 | 4.9E-28 | IPR006880 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 345 | 372 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 26 | 60 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 345 | 444 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 85 | 101 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 168 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 109 | 139 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 212 | 230 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 190 | 285 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 383 | 401 | - | - |
| Coils | Coil | Coil | 439 | 476 | - | - |
| Coils | Coil | Coil | 489 | 509 | - | - |
Gene Ontology
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G56460.1 | HIT zinc finger ;PAPA-1-like conserved region. | 0 |
| RefSeq | XP_029118804.1 | uncharacterized protein LOC105039939 [Elaeis guineensis] | 0 |
| TrEMBL | A0A8K0MU28 | Eukaryotic translation initiation factor 5B-like OS=Cocos nucifera OX=13894 GN=COCNU_01G001180 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology