Basic Information
Locus ID:
COCNU_01G001100
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 2489335 | 2501923 | - | COCNU_01G001100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.00 | 81,097.34 Da | 53.26 | 68.38 | -0.63 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd13999 | STKc_MAP3K-like | 495 | 698 | 3.39848E-89 | - |
| CDD | cd00130 | PAS | 123 | 224 | 4.3717E-14 | IPR000014 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 543 | 697 | 7.5E-42 | IPR001245 |
| Pfam | PF13426 | PAS domain | 131 | 224 | 9.9E-12 | IPR000014 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 470 | 696 | 1.2E-61 | IPR011009 |
| SUPERFAMILY | SSF55785 | PYP-like sensor domain (PAS domain) | 112 | 224 | 6.46E-19 | IPR035965 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 543 | 711 | 5.6E-58 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 482 | 542 | 5.5E-14 | - |
| Gene3D | G3DSA:3.30.450.20 | PAS domain | 124 | 229 | 4.9E-22 | - |
| SMART | SM00091 | pas_2 | 114 | 181 | 5.1E-7 | IPR000014 |
| SMART | SM00220 | serkin_6 | 489 | 699 | 6.9E-23 | IPR000719 |
| TIGRFAM | TIGR00229 | sensory_box: PAS domain S-box protein | 112 | 224 | 6.9E-12 | IPR000014 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 439 | 706 | 28.046816 | IPR000719 |
| ProSiteProfiles | PS50112 | PAS repeat profile. | 112 | 183 | 14.545731 | IPR000014 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 565 | 577 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 299 | 365 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 26 | 102 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 421 | 468 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 62 | 99 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 320 | 349 | - | - |
| Coils | Coil | Coil | 5 | 25 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67890.1 | PAS domain-containing protein tyrosine kinase family protein. | 0 |
| RefSeq | XP_010914582.3 | LOW QUALITY PROTEIN: dual specificity protein kinase shkD-like [Elaeis guineensis] | 0 |
| Q9FPR3 | Serine/threonine-protein kinase EDR1 OS=Arabidopsis thaliana OX=3702 GN=EDR1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8K0HSW4 | RGS domain-containing serine/threonine-protein kinase A OS=Cocos nucifera OX=13894 GN=COCNU_01G001100 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology