Basic Information
Locus ID:
COCNU_01G000580
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Glycosyl hydrolases family 28
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 1395741 | 1397612 | - | COCNU_01G000580 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.07 | 49,233.18 Da | 54.34 | 78.43 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00295 | Glycosyl hydrolases family 28 | 106 | 404 | 1.2E-87 | IPR000743 |
| SUPERFAMILY | SSF51126 | Pectin lyase-like | 68 | 440 | 1.8E-130 | IPR011050 |
| Gene3D | G3DSA:2.160.20.10 | - | 60 | 445 | 2.6E-124 | IPR012334 |
| SMART | SM00710 | pbh1 | 218 | 244 | 160.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 268 | 288 | 3000.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 298 | 319 | 12.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 327 | 348 | 2600.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 245 | 266 | 490.0 | IPR006626 |
| ProSitePatterns | PS00502 | Polygalacturonase active site. | 275 | 288 | - | IPR000743 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48100.1 | Pectin lyase-like superfamily protein. | 0 |
| RefSeq | XP_010914688.1 | polygalacturonase At1g48100 [Elaeis guineensis] | 0 |
| Q949Z1 | Polygalacturonase At1g48100 OS=Arabidopsis thaliana OX=3702 GN=At1g48100 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8K0MTZ7 | Polygalacturonase OS=Cocos nucifera OX=13894 GN=COCNU_01G000580 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology