HalophFGD

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Basic Information
Locus ID: COCNU_01G000270
Species & Taxonomic ID: Cocos nucifera & 13894
Genome Assembly: GCA_008124465.1
Description: Protein translocase subunit
Maps and Mapping Data
Chromosome Start End Strand ID
chr1 625149 651921 - COCNU_01G000270
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
5.96 183,834.30 Da 45.03 88.01 -0.28
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
CDD cd17928 DEXDc_SecA 834 1140 4.09883E-104 -
CDD cd01468 trunk_domain 273 510 5.42404E-65 -
CDD cd18803 SF2_C_secA 1146 1395 3.77178E-55 IPR044722
Pfam PF04811 Sec23/Sec24 trunk domain 274 501 1.2E-13 IPR006896
Pfam PF01043 SecA preprotein cross-linking domain 978 1084 3.9E-35 IPR011130
Pfam PF08033 Sec23/Sec24 beta-sandwich domain 519 610 1.3E-12 IPR012990
Pfam PF04815 Sec23/Sec24 helical domain 624 720 1.1E-9 IPR006900
Pfam PF07517 SecA DEAD-like domain 835 1128 3.1E-98 IPR011115
Pfam PF07516 SecA Wing and Scaffold domain 1400 1615 5.3E-55 IPR011116
Pfam PF04810 Sec23/Sec24 zinc finger 193 231 2.7E-10 IPR006895
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 1142 1393 4.59E-34 IPR027417
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 824 1141 1.52E-59 IPR027417
SUPERFAMILY SSF81767 Pre-protein crosslinking domain of SecA 972 1094 2.75E-43 IPR036670
SUPERFAMILY SSF81811 Helical domain of Sec23/24 623 723 1.78E-20 IPR036175
SUPERFAMILY SSF82919 Zn-finger domain of Sec23/24 183 257 6.41E-17 IPR036174
SUPERFAMILY SSF81886 Helical scaffold and wing domains of SecA 1403 1626 1.96E-62 IPR036266
SUPERFAMILY SSF82754 C-terminal, gelsolin-like domain of Sec23/24 725 803 1.83E-12 IPR036180
SUPERFAMILY SSF81995 beta-sandwich domain of Sec23/24 48 620 8.37E-29 -
SUPERFAMILY SSF53300 vWA-like 275 502 9.53E-39 IPR036465
Gene3D G3DSA:1.20.120.730 Sec23/Sec24 helical domain 611 731 5.8E-16 -
Gene3D G3DSA:3.40.50.300 - 1143 1431 5.2E-64 IPR027417
Gene3D G3DSA:1.10.3060.10 Helical scaffold and wing domains of SecA 1432 1619 5.2E-48 -
Gene3D G3DSA:2.30.30.380 - 184 246 1.4E-9 -
Gene3D G3DSA:3.90.1440.10 - 974 1094 7.5E-149 -
Gene3D G3DSA:3.40.50.300 - 835 1141 7.5E-149 IPR027417
Gene3D G3DSA:3.40.50.410 von Willebrand factor, type A domain 273 516 1.6E-41 IPR036465
SMART SM00958 SecA_PP_bind_2 973 1084 1.8E-58 IPR011130
SMART SM00957 SecA_DEAD_2 778 1128 2.0E-187 IPR011115
TIGRFAM TIGR00963 secA: preprotein translocase, SecA subunit 835 1388 9.2E-242 IPR000185
ProSiteProfiles PS51192 Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 834 992 17.07313 IPR014001
ProSiteProfiles PS51196 SecA family profile. 704 1436 124.431526 IPR014018
ProSitePatterns PS01312 SecA family signature. 1228 1243 - IPR020937
PRINTS PR00906 SecA protein signature 1065 1087 2.0E-54 IPR000185
PRINTS PR00906 SecA protein signature 915 935 2.0E-54 IPR000185
PRINTS PR00906 SecA protein signature 1139 1152 2.0E-54 IPR000185
PRINTS PR00906 SecA protein signature 846 860 2.0E-54 IPR000185
PRINTS PR00906 SecA protein signature 862 872 2.0E-54 IPR000185
PRINTS PR00906 SecA protein signature 1102 1119 2.0E-54 IPR000185
Hamap MF_01382 Protein translocase subunit SecA [secA]. 591 1618 16.672516 IPR000185
MobiDBLite mobidb-lite consensus disorder prediction 1 85 - -
MobiDBLite mobidb-lite consensus disorder prediction 34 79 - -
MobiDBLite mobidb-lite consensus disorder prediction 1624 1652 - -
Gene Ontology
Biological Process:
GO:0006605 (protein targeting) GO:0006886 (intracellular protein transport) GO:0006888 (endoplasmic reticulum to Golgi vesicle-mediated transport) GO:0017038 (protein import)
Molecular Function:
GO:0005524 (ATP binding) GO:0008270 (zinc ion binding)
Cellular Component:
GO:0016020 (membrane) GO:0030127 (COPII vesicle coat)
KEGG Pathway
KO Term:
K03070 (preprotein translocase subunit SecA [EC:7.4.2.8])
Pathway:
ko02024 (Quorum sensing) map02024 (Quorum sensing) ko03060 (Protein export) map03060 (Protein export) ko03070 (Bacterial secretion system) map03070 (Bacterial secretion system)
Best hit
Source Best Hit ID Description E-value
TAIR AT4G01800.1 Albino or Glassy Yellow 1. Encodes the ATPase subunit of the chloroplast Sec translocation machinery which plays an essential role in chloroplast biogenesis and the regulation of photosynthesis, the absence of which triggers a retrograde signal, eventually leading to a reprogramming of chloroplast and mitochondrial gene expression. 0
RefSeq XP_010914784.1 protein transport protein SEC23 [Elaeis guineensis] 0
Swiss-Prot Q9SYI0 Protein translocase subunit SECA1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SECA1 PE=1 SV=2 0
TrEMBL A0A8K0HTE4 Protein translocase subunit SecA OS=Cocos nucifera OX=13894 GN=COCNU_01G000270 PE=3 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Acanthaceae Avicennia marina 2 jg10458, jg9019
Aizoaceae Mesembryanthemum crystallinum 2 gene_1077, gene_13408
Amaranthaceae Atriplex hortensis 2 Ah024121, Ah031607
Amaranthaceae Beta vulgaris 2 BVRB_1g010050, BVRB_5g122730
Amaranthaceae Salicornia bigelovii 5 Sbi_jg2775, Sbi_jg28369, Sbi_jg31191, Sbi_jg58082 ...
Sbi_jg58084
Amaranthaceae Salicornia europaea 2 Seu_jg25704, Seu_jg7111
Amaranthaceae Suaeda aralocaspica 2 GOSA_00004576, GOSA_00020180
Amaranthaceae Suaeda glauca 4 Sgl11665, Sgl17164, Sgl54639, Sgl59975
Amaranthaceae Chenopodium album 6 gene:ENSEOMG00000011856, gene:ENSEOMG00000013510 ...
gene:ENSEOMG00000031530, gene:ENSEOMG00000034341, gene:ENSEOMG00000044225, gene:ENSEOMG00000046942
Amaranthaceae Chenopodium quinoa 4 CQ.Regalona.r1.1AG0012840, CQ.Regalona.r1.1BG0013100 ...
CQ.Regalona.r1.8AG0010550, CQ.Regalona.r1.8BG0011700
Anacardiaceae Pistacia vera 2 pistato.v30007280, pistato.v30039110
Apiaceae Apium graveolens 3 Ag11G03939, Ag6G02443, Ag9G02368
Arecaceae Cocos nucifera 2 COCNU_01G000270, COCNU_15G003170
Arecaceae Phoenix dactylifera 2 gene-LOC103701417, gene-LOC103720122
Asparagaceae Asparagus officinalis 2 AsparagusV1_02.2259.V1.1, AsparagusV1_07.3638.V1.1
Asteraceae Flaveria trinervia 2 Ftri10G32559, Ftri18G11286
Brassicaceae Arabidopsis thaliana 2 AT1G21650.3, AT4G01800.2
Brassicaceae Eutrema salsugineum 2 Thhalv10006535m.g.v1.0, Thhalv10028392m.g.v1.0
Brassicaceae Schrenkiella parvula 2 Sp1g19170.v2.2, Sp6g01650.v2.2
Brassicaceae Brassica nigra 2 BniB03g009290.2N, BniB08g040660.2N
Casuarinaceae Casuarina equisetifolia 2 Ceq03G1867, Ceq06G0547
Casuarinaceae Casuarina glauca 2 Cgl03G2007, Cgl06G0567
Cymodoceaceae Cymodocea nodosa 2 gene.Cymno05g06910, gene.Cymno08g07140
Dunaliellaceae Dunaliella salina 2 Dusal.0027s00037.v1.0, Dusal.0035s00032.v1.0
Hydrocharitaceae Thalassia testudinum 2 gene.Thate01g16040, gene.Thate05g12950
Nitrariaceae Nitraria sibirica 2 evm.TU.LG04.547, evm.TU.LG06.839
Plantaginaceae Plantago ovata 2 Pov_00016539, Pov_00021694
Plumbaginaceae Limonium bicolor 2 Lb4G22942, Lb6G30841
Poaceae Echinochloa crus-galli 5 AH02.1497, BH02.1573, BH04.644, CH02.1719, CH04.655
Poaceae Eleusine coracana subsp. coracana 4 gene-QOZ80_1AG0015110, gene-QOZ80_1BG0063980 ...
gene-QOZ80_9AG0670100, gene-QOZ80_9BG0693570
Poaceae Hordeum vulgare 2 HORVU.MOREX.r3.3HG0259100.1, HORVU.MOREX.r3.4HG0347020.1
Poaceae Lolium multiflorum 3 gene-QYE76_052738, gene-QYE76_059523, gene-QYE76_064524
Poaceae Oryza coarctata 3 Oco01G009280, Oco02G009570, Oco22G003520
Poaceae Oryza sativa 2 LOC_Os01g21820.1, LOC_Os11g08980.1
Poaceae Paspalum vaginatum 2 gene-BS78_03G139800, gene-BS78_05G097000
Poaceae Puccinellia tenuiflora 2 Pt_Chr0103927, Pt_Chr0603665
Poaceae Sporobolus alterniflorus 6 Chr02G022280, Chr05G013160, Chr05G013200, Chr05G013210 ...
Chr16G010730, Chr17G009810
Poaceae Thinopyrum elongatum 2 Tel3E01G338700, Tel4E01G158600
Poaceae Triticum dicoccoides 4 gene_TRIDC3AG028190, gene_TRIDC3BG032070 ...
gene_TRIDC4AG034290, gene_TRIDC4BG015530
Poaceae Triticum aestivum 6 TraesCS3A02G198400.1, TraesCS3B02G222700.1 ...
TraesCS3D02G196700.2, TraesCS4A02G216200.1, TraesCS4B02G100000.1, TraesCS4D02G096200.1
Poaceae Zea mays 2 Zm00001eb090990_P001, Zm00001eb130760_P002
Poaceae Zoysia japonica 2 nbis-gene-27238, nbis-gene-6517
Poaceae Zoysia macrostachya 2 Zma_g10242, Zma_g18533
Portulacaceae Portulaca oleracea 3 evm.TU.LG04.1549, evm.TU.LG10.1366, evm.TU.LG11.1721
Posidoniaceae Posidonia oceanica 2 gene.Posoc01g13940, gene.Posoc05g18660
Rhizophoraceae Bruguiera sexangula 2 evm.TU.Scaffold_5_RagTag.729, evm.TU.Scaffold_7_RagTag.1138
Rhizophoraceae Carallia pectinifolia 2 nbisL1-mrna-10616, nbisL1-mrna-18708
Rhizophoraceae Ceriops tagal 2 nbisL1-mrna-103, nbisL1-mrna-5559
Rhizophoraceae Ceriops zippeliana 2 nbisL1-mrna-11369, nbisL1-mrna-13125
Rhizophoraceae Kandelia candel 2 evm.TU.utg000002l.412, evm.TU.utg000006l.609
Rhizophoraceae Kandelia obovata 2 Maker00011737, Maker00013085
Rhizophoraceae Rhizophora apiculata 2 nbisL1-mrna-10163, nbisL1-mrna-8110
Rhizophoraceae Rhizophora mangle 2 nbisL1-mrna-7364, nbisL1-mrna-9803
Salicaceae Populus euphratica 2 populus_peu27429, populus_peu32459
Solanaceae Lycium barbarum 2 gene-LOC132627149, gene-LOC132644885
Solanaceae Solanum chilense 2 SOLCI001197400, SOLCI003112400
Solanaceae Solanum pennellii 2 gene-LOC107002391, gene-LOC107004481
Tamaricaceae Reaumuria soongarica 2 gene_17557, gene_866
Tamaricaceae Tamarix chinensis 2 TC03G2545, TC07G1717
Zosteraceae Zostera marina 4 Zosma03g36860.v3.1, Zosma03g36910.v3.1, Zosma06g28380.v3.1 ...
Zosma07g00120.v3.1
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