Basic Information
Locus ID:
COCNU_01G000190
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
DEAD-box ATP-dependent RNA helicase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 503942 | 521614 | + | COCNU_01G000190 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.42 | 130,592.93 Da | 68.67 | 62.96 | -0.74 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 754 | 882 | 4.48164E-60 | - |
| CDD | cd00201 | WW | 23 | 52 | 4.20027E-4 | IPR001202 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 559 | 729 | 3.7E-48 | IPR011545 |
| Pfam | PF00397 | WW domain | 22 | 52 | 4.7E-7 | IPR001202 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 766 | 873 | 8.5E-32 | IPR001650 |
| SUPERFAMILY | SSF51045 | WW domain | 17 | 55 | 4.79E-8 | IPR036020 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 607 | 890 | 1.61E-72 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 510 | 743 | 4.6E-86 | IPR027417 |
| Gene3D | G3DSA:2.20.70.10 | - | 17 | 59 | 1.9E-5 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 744 | 915 | 3.2E-57 | IPR027417 |
| SMART | SM00490 | helicmild6 | 794 | 873 | 6.1E-31 | IPR001650 |
| SMART | SM00456 | ww_5 | 21 | 54 | 2.5E-6 | IPR001202 |
| SMART | SM00487 | ultradead3 | 554 | 757 | 2.6E-65 | IPR014001 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 535 | 563 | 10.664929 | IPR014014 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 566 | 740 | 30.163496 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 769 | 912 | 24.3666 | IPR001650 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 20 | 54 | 11.4869 | IPR001202 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 686 | 694 | - | IPR000629 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 26 | 52 | - | IPR001202 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 274 | 311 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 928 | 976 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 353 | 373 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 200 | 219 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 49 | 70 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1077 | 1091 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1134 | 1184 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1044 | 1058 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 129 | 175 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1044 | 1097 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06480.1 | DEAD box RNA helicase family protein. | 0 |
| RefSeq | XP_008777060.2 | LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase 40 [Phoenix dactylifera] | 0 |
| Q9SQV1 | DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis thaliana OX=3702 GN=RH40 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8K0HSM1 | DEAD-box ATP-dependent RNA helicase 46 OS=Cocos nucifera OX=13894 GN=COCNU_01G000190 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology