Basic Information
Locus ID:
CH09.937
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Short Name:
AFB3
Description:
F-box-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH09 | 17722152 | 17725750 | - | CH09.937 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.20 | 57,842.79 Da | 43.67 | 94.99 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18511 | F-box | 1 | 41 | 1.0E-16 | IPR041567 |
| Pfam | PF13516 | Leucine Rich repeat | 149 | 167 | 0.95 | IPR001611 |
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 61 | 107 | 1.7E-23 | IPR041101 |
| SUPERFAMILY | SSF81383 | F-box domain | 1 | 35 | 2.49E-8 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 25 | 469 | 1.39E-32 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 41 | 318 | 1.1E-85 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 40 | 3.9E-18 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 319 | 513 | 6.7E-61 | IPR032675 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G26810.1 | auxin signaling F-box 2. | 7.1E-246 |
| RefSeq | XP_025824574.1 | transport inhibitor response 1-like protein Os04g0395600 [Panicum hallii] | 0 |
| Q7XVM8 | Transport inhibitor response 1-like protein Os04g0395600 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0395600 PE=2 SV=1 | 0 | |
| TrEMBL | A0A678V1B9 | Auxin receptor TIR1 OS=Echinochloa crus-galli OX=90397 GN=TIR1 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology