Basic Information
Locus ID:
CH09.918
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
ABC transporter transmembrane region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH09 | 17520594 | 17526748 | + | CH09.918 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.44 | 163,088.63 Da | 43.12 | 101.27 | 0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03250 | ABCC_MRP_domain1 | 569 | 768 | 1.81254E-107 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 255 | 543 | 6.99662E-86 | IPR044746 |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 884 | 1178 | 1.10842E-90 | IPR044726 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1201 | 1421 | 1.12358E-122 | - |
| Pfam | PF00005 | ABC transporter | 1220 | 1368 | 6.0E-29 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 255 | 521 | 3.6E-26 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 888 | 1130 | 6.4E-30 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 587 | 721 | 9.5E-18 | IPR003439 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 884 | 1183 | 6.28E-51 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 249 | 551 | 1.83E-31 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1195 | 1429 | 5.82E-66 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 566 | 788 | 2.34E-55 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 565 | 796 | 9.2E-69 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 846 | 1184 | 3.1E-58 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 233 | 552 | 1.6E-45 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1186 | 1438 | 3.2E-81 | IPR027417 |
| SMART | SM00382 | AAA_5 | 1229 | 1421 | 1.3E-9 | IPR003593 |
| SMART | SM00382 | AAA_5 | 596 | 769 | 1.5E-9 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1205 | 1437 | 16.686811 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 569 | 792 | 21.555401 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 257 | 535 | 32.302883 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 886 | 1166 | 36.894768 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 694 | 708 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 844 | 861 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 811 | 861 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 814 | 833 | - | - |
| Coils | Coil | Coil | 416 | 436 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G60160.1 | multidrug resistance-associated protein 9. member of MRP subfamily | 0 |
| RefSeq | XP_014661069.2 | putative ABC transporter C family member 15 [Setaria italica] | 0 |
| Q9M1C7 | ABC transporter C family member 9 OS=Arabidopsis thaliana OX=3702 GN=ABCC9 PE=2 SV=2 | 0 | |
| TrEMBL | A0A368RT84 | ABC transporter C family member 15 OS=Setaria italica OX=4555 GN=SETIT_7G076800v2 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology