Basic Information
Locus ID:
CH09.863
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH09 | 16794836 | 16796856 | - | CH09.863 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.26 | 66,793.20 Da | 53.18 | 69.92 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01753 | MYND finger | 567 | 607 | 4.4E-7 | IPR002893 |
| SUPERFAMILY | SSF81383 | F-box domain | 284 | 334 | 7.41E-5 | IPR036047 |
| SUPERFAMILY | SSF81901 | HCP-like | 348 | 465 | 1.09E-10 | - |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 567 | 612 | 8.37E-10 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 554 | 612 | 1.2E-10 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 312 | 485 | 1.8E-14 | IPR011990 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 565 | 607 | 10.95451 | IPR002893 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 61 | 95 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 46 | 150 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 242 | 273 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 250 | 264 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67340.1 | HCP-like superfamily protein with MYND-type zinc finger. | 2.16E-114 |
| RefSeq | XP_034602327.1 | F-box protein At5g50450-like [Setaria viridis] | 6.83E-192 |
| Q9FYF9 | F-box protein At1g67340 OS=Arabidopsis thaliana OX=3702 GN=At1g67340 PE=1 SV=1 | 2.08E-113 | |
| TrEMBL | A0A4U6TPX5 | MYND-type domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_7G077800v2 PE=4 SV=1 | 1.55E-190 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology