Basic Information
Locus ID:
CH09.794
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Glycosyl hydrolases family 18
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH09 | 16014154 | 16015658 | - | CH09.794 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.79 | 48,636.53 Da | 47.08 | 82.79 | 0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00704 | Glycosyl hydrolases family 18 | 58 | 387 | 2.5E-48 | IPR001223 |
| SUPERFAMILY | SSF54556 | Chitinase insertion domain | 280 | 358 | 1.68E-11 | IPR029070 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 52 | 391 | 9.43E-48 | IPR017853 |
| Gene3D | G3DSA:3.10.50.10 | - | 279 | 358 | 4.7E-69 | IPR029070 |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 59 | 387 | 4.7E-69 | - |
| SMART | SM00636 | 2g34 | 41 | 387 | 5.9E-53 | IPR011583 |
| ProSiteProfiles | PS51910 | Glycosyl hydrolases family 18 (GH18) domain profile. | 40 | 404 | 44.676094 | IPR001223 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19810.1 | Glycosyl hydrolase family protein with chitinase insertion domain. | 3.01E-48 |
| RefSeq | XP_034605923.1 | nod factor hydrolase protein 1-like isoform X1 [Setaria viridis] | 1.71E-250 |
| U5N4E3 | Nod factor hydrolase protein 1 OS=Medicago truncatula OX=3880 GN=NFH1 PE=1 SV=2 | 3.17E-49 | |
| TrEMBL | A0A4U6TMH4 | GH18 domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_7G071500v2 PE=4 SV=1 | 3.87E-249 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology