Basic Information
Locus ID:
CH09.776
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Nuclear transport factor 2 (NTF2) domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH09 | 15781022 | 15785437 | - | CH09.776 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.48 | 52,195.43 Da | 59.24 | 61.41 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00590 | RRM_SF | 331 | 402 | 3.72984E-13 | - |
| CDD | cd00780 | NTF2 | 28 | 147 | 1.20239E-38 | IPR018222 |
| Pfam | PF02136 | Nuclear transport factor 2 (NTF2) domain | 30 | 146 | 4.2E-25 | IPR002075 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 331 | 389 | 1.4E-11 | IPR000504 |
| SUPERFAMILY | SSF54427 | NTF2-like | 26 | 147 | 8.22E-32 | IPR032710 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 314 | 418 | 1.75E-18 | IPR035979 |
| Gene3D | G3DSA:3.10.450.50 | - | 22 | 149 | 4.5E-33 | - |
| Gene3D | G3DSA:3.30.70.330 | - | 278 | 424 | 3.5E-16 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 330 | 402 | 4.8E-14 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 329 | 406 | 11.758731 | IPR000504 |
| ProSiteProfiles | PS50177 | Nuclear transport factor 2 domain profile. | 30 | 146 | 27.439337 | IPR018222 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 285 | 299 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 283 | 302 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 453 | 496 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 404 | 433 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 181 | 215 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60980.2 | Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain. | 6.33E-92 |
| RefSeq | XP_025823500.1 | ras GTPase-activating protein-binding protein 1-like [Panicum hallii] | 2.58E-257 |
| Q9FME2 | Nuclear transport factor 2 OS=Arabidopsis thaliana OX=3702 GN=NTF2 PE=1 SV=1 | 6.11E-91 | |
| TrEMBL | A0A3L6PUM4 | G3BP-like protein OS=Panicum miliaceum OX=4540 GN=C2845_PM16G05300 PE=4 SV=1 | 3.42E-257 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology