Basic Information
Locus ID:
CH09.77
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RING-variant domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH09 | 1121648 | 1125176 | + | CH09.77 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.15 | 53,986.40 Da | 64.84 | 77.68 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 236 | 284 | 4.01564E-16 | - |
| Pfam | PF12906 | RING-variant domain | 236 | 283 | 6.1E-12 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 232 | 286 | 2.12E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 223 | 291 | 2.3E-16 | IPR013083 |
| SMART | SM00744 | ringv_2 | 235 | 284 | 5.3E-19 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 228 | 290 | 19.340805 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 100 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 15 | 35 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 60 | 95 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 445 | 492 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 456 | 474 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60580.1 | RING/U-box superfamily protein. | 4.25E-99 |
| RefSeq | XP_025824979.1 | probable E3 ubiquitin-protein ligase MARCH10 isoform X1 [Panicum hallii] | 1.4E-242 |
| TrEMBL | A0A2S3I4Y6 | RING-CH-type domain-containing protein OS=Panicum hallii OX=206008 GN=PAHAL_7G006800 PE=4 SV=1 | 3.16E-241 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology