Basic Information
Locus ID:
CH09.632
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Belongs to the cullin family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH09 | 12845334 | 12853445 | + | CH09.632 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.11 | 83,373.05 Da | 38.34 | 98.00 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00888 | Cullin family | 350 | 704 | 3.9E-65 | IPR001373 |
| SUPERFAMILY | SSF75632 | Cullin homology domain | 554 | 704 | 1.05E-29 | IPR036317 |
| SUPERFAMILY | SSF74788 | Cullin repeat-like | 353 | 545 | 1.78E-38 | IPR016159 |
| Gene3D | G3DSA:1.20.1310.10 | Cullin Repeats | 450 | 552 | 6.6E-6 | - |
| Gene3D | G3DSA:1.20.1310.10 | Cullin Repeats | 347 | 449 | 2.0E-22 | - |
| Gene3D | G3DSA:1.20.1310.10 | Cullin Repeats | 553 | 662 | 1.3E-22 | - |
| SMART | SM00182 | cul_2 | 584 | 732 | 3.5E-8 | IPR016158 |
| ProSiteProfiles | PS50069 | Cullin family profile. | 554 | 704 | 21.523439 | IPR016158 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 41 | 65 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G26830.1 | cullin 3. Cullin, putative, similar to Cullin homolog 3 (CUL-3) SP:Q13618, GI:3639052 from (Homo sapiens); contains Pfam profile PF00888: Cullin family. Interacts with other components of E3 ligase complex suggesting it functions in RUB-modification. Forms complexes with BTB domain proteins forming a novel class of E3-based ubiquitin protein-ligase complexes. Mutant is early flowering and has a reduced sensitivity to far-red light. cul3a/cul3b homozygous/heterozygous plants are embryo lethal. | 4.72E-55 |
| RefSeq | XP_010091211.1 | cullin-3A [Morus notabilis] | 2.35E-56 |
| Q9ZVH4 | Cullin-3A OS=Arabidopsis thaliana OX=3702 GN=CUL3A PE=1 SV=1 | 4.64E-54 | |
| TrEMBL | W9QV94 | CULLIN_2 domain-containing protein OS=Morus notabilis OX=981085 GN=L484_006528 PE=3 SV=1 | 5.32E-55 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||