Basic Information
Locus ID:
CH09.521
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Phloem protein 2
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH09 | 10483120 | 10486022 | - | CH09.521 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.54 | 54,757.80 Da | 51.51 | 77.42 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14299 | Phloem protein 2 | 226 | 363 | 1.1E-35 | IPR025886 |
| Pfam | PF12937 | F-box-like | 9 | 50 | 3.7E-6 | IPR001810 |
| Pfam | PF14299 | Phloem protein 2 | 102 | 140 | 8.2E-10 | IPR025886 |
| SUPERFAMILY | SSF81383 | F-box domain | 5 | 60 | 8.5E-12 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 8 | 50 | 6.5E-8 | - |
| ProSiteProfiles | PS50181 | F-box domain profile. | 6 | 52 | 9.762413 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 470 | 497 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G24560.1 | phloem protein 2-B12. | 1.41E-23 |
| RefSeq | XP_034579110.1 | F-box protein PP2-B11-like isoform X1 [Setaria viridis] | 4.18E-95 |
| Q9FLU7 | Putative F-box protein PP2-B12 OS=Arabidopsis thaliana OX=3702 GN=PP2B12 PE=4 SV=1 | 4.83E-22 | |
| TrEMBL | A0A4U6WJR1 | F-box domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_1G368100v2 PE=4 SV=1 | 9.45E-94 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||