Basic Information
Locus ID:
CH09.509
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Belongs to the terpene cyclase mutase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH09 | 10188309 | 10219910 | + | CH09.509 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.68 | 161,024.95 Da | 47.10 | 77.89 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13249 | Squalene-hopene cyclase N-terminal domain | 42 | 319 | 1.2E-32 | IPR032697 |
| Pfam | PF13960 | Domain of unknown function (DUF4218) | 711 | 820 | 5.3E-36 | IPR025452 |
| Pfam | PF13963 | Transposase-associated domain | 543 | 622 | 1.0E-21 | IPR029480 |
| SUPERFAMILY | SSF48239 | Terpenoid cyclases/Protein prenyltransferases | 66 | 349 | 3.66E-93 | IPR008930 |
| SUPERFAMILY | SSF48239 | Terpenoid cyclases/Protein prenyltransferases | 334 | 459 | 1.88E-12 | IPR008930 |
| Gene3D | G3DSA:1.50.10.20 | - | 352 | 458 | 7.3E-6 | - |
| Gene3D | G3DSA:1.50.10.20 | - | 61 | 351 | 2.3E-121 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1002 | 1065 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1280 | 1313 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1019 | 1047 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 461 | 490 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1296 | 1311 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1002 | 1016 | - | - |
| Coils | Coil | Coil | 982 | 1002 | - | - |
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G07050.1 | cycloartenol synthase 1. Involved in the biosynthesis of brassinosteroids. Catalyzes the reaction from epoxysqualene to cycloartenol. | 4.99E-161 |
| RefSeq | XP_025823340.1 | achilleol B synthase-like isoform X3 [Panicum hallii] | 2.36E-296 |
| Q2R712 | Achilleol B synthase OS=Oryza sativa subsp. japonica OX=39947 GN=Os11g0285000 PE=1 SV=1 | 7.19E-211 | |
| TrEMBL | A0A2T8IB96 | Terpene cyclase/mutase family member OS=Panicum hallii OX=206008 GN=PAHAL_7G075800 PE=3 SV=1 | 1.49E-286 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 21 | AH03.846, AH06.2807, AH08.1580, AH09.657, BH01.2974, BH06.72 ... |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_8BG0662420 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_041727 |
| Poaceae | Oryza coarctata | 6 | Oco04G010980, Oco07G006700, Oco09G013450, Oco10G000820 ... |
| Poaceae | Oryza sativa | 3 | LOC_Os05g36240.1, LOC_Os07g05840.1, LOC_Os11g41770.1 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0205778 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr17G011710, Chr29G008210 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC5AG051480 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-28977, nbis-gene-48363 |
| Poaceae | Zoysia macrostachya | 5 | Zma_g10227, Zma_g23699, Zma_g23855, Zma_g32507, Zma_g32508 |