Basic Information
Locus ID:
CH09.460
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Putative gypsy type transposon
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH09 | 8619578 | 8621683 | - | CH09.460 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.08 | 50,963.17 Da | 73.73 | 64.77 | -0.73 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | mobidb-lite | consensus disorder prediction | 155 | 299 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 341 | 413 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 383 | 413 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 155 | 178 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 40 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 231 | 255 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_034576780.1 | uncharacterized protein LOC117840382 [Setaria viridis] | 6.82E-8 |
| TrEMBL | A0A3L6RZI9 | Retrotransposon protein, putative, Ty3-gypsy subclass OS=Panicum miliaceum OX=4540 GN=C2845_PM09G11830 PE=4 SV=1 | 3.31E-13 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||