Basic Information
Locus ID:
CH09.3263
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
LisH
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH09 | 38361499 | 38367615 | - | CH09.3263 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.89 | 81,573.48 Da | 45.22 | 71.14 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 468 | 749 | 3.29538E-53 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 469 | 496 | 0.012 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 635 | 666 | 3.0E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 507 | 538 | 3.8E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 546 | 581 | 2.9E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 718 | 749 | 0.087 | IPR001680 |
| Pfam | PF08513 | LisH | 10 | 34 | 7.9E-7 | IPR006594 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 466 | 749 | 5.19E-59 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 405 | 592 | 1.1E-31 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 593 | 749 | 1.9E-28 | IPR015943 |
| SMART | SM00320 | WD40_4 | 628 | 666 | 1.3E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 585 | 624 | 190.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 457 | 496 | 0.0012 | IPR001680 |
| SMART | SM00320 | WD40_4 | 669 | 708 | 15.0 | IPR001680 |
| SMART | SM00667 | Lish | 8 | 40 | 0.0014 | IPR006594 |
| SMART | SM00320 | WD40_4 | 499 | 538 | 3.0E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 542 | 582 | 8.0E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 710 | 749 | 0.0013 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 549 | 591 | 10.475033 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 8 | 40 | 9.432788 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 464 | 505 | 9.004632 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 549 | 583 | 8.781968 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 717 | 749 | 11.89286 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 506 | 538 | 11.444681 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 506 | 538 | 13.816853 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 717 | 749 | 12.714052 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 323 | 375 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 323 | 367 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.6 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 7.41E-207 |
| RefSeq | XP_025794282.1 | transcriptional corepressor LEUNIG_HOMOLOG-like isoform X1 [Panicum hallii] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 6.87E-204 | |
| TrEMBL | A0A2T7BY28 | LisH domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_9G001500 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology