Basic Information
Locus ID:
CH09.3250
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Elongation factor Tu C-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH09 | 38213593 | 38232806 | - | CH09.3250 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.11 | 236,882.69 Da | 48.85 | 77.61 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 1282 | 1536 | 1.63275E-66 | - |
| CDD | cd04093 | HBS1_C_III | 825 | 929 | 3.34167E-37 | - |
| CDD | cd01883 | EF1_alpha | 510 | 729 | 3.85163E-108 | - |
| CDD | cd16267 | HBS1-like_II | 737 | 821 | 3.34703E-24 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 1366 | 1402 | 8.7E-7 | IPR001680 |
| Pfam | PF13925 | con80 domain of Katanin | 2030 | 2185 | 5.4E-47 | IPR028021 |
| Pfam | PF00400 | WD domain, G-beta repeat | 1407 | 1444 | 1.3E-11 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 1284 | 1317 | 0.093 | IPR001680 |
| Pfam | PF00009 | Elongation factor Tu GTP binding domain | 508 | 703 | 5.1E-42 | IPR000795 |
| Pfam | PF07011 | Early Flowering 4 domain | 91 | 167 | 4.6E-30 | IPR009741 |
| Pfam | PF00400 | WD domain, G-beta repeat | 1448 | 1486 | 1.4E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 1325 | 1360 | 0.0012 | IPR001680 |
| Pfam | PF03143 | Elongation factor Tu C-terminal domain | 829 | 929 | 1.0E-10 | IPR004160 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 1283 | 1563 | 1.28E-70 | IPR036322 |
| SUPERFAMILY | SSF50447 | Translation proteins | 732 | 824 | 3.53E-15 | IPR009000 |
| SUPERFAMILY | SSF50465 | EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain | 831 | 929 | 1.36E-21 | IPR009001 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 505 | 746 | 7.87E-58 | IPR027417 |
| Gene3D | G3DSA:2.40.30.10 | Translation factors | 825 | 931 | 1.4E-27 | - |
| Gene3D | G3DSA:2.40.30.10 | Translation factors | 735 | 824 | 1.0E-20 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 1403 | 1597 | 1.4E-39 | IPR015943 |
| Gene3D | G3DSA:3.40.50.300 | - | 481 | 728 | 5.5E-77 | IPR027417 |
| Gene3D | G3DSA:2.130.10.10 | - | 1274 | 1402 | 4.7E-32 | IPR015943 |
| SMART | SM00320 | WD40_4 | 1363 | 1402 | 6.2E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1489 | 1527 | 16.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1405 | 1444 | 2.1E-13 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1278 | 1318 | 0.032 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1447 | 1486 | 5.7E-11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1321 | 1360 | 2.5E-5 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 1328 | 1369 | 15.120162 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 1370 | 1411 | 15.554599 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 1454 | 1495 | 15.287253 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 1454 | 1489 | 12.156496 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 1370 | 1404 | 11.89286 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 1412 | 1453 | 18.69591 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 1412 | 1449 | 14.371031 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 1285 | 1317 | 8.57106 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 1328 | 1362 | 11.260138 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 1285 | 1327 | 10.541869 | IPR001680 |
| ProSiteProfiles | PS51722 | Translational (tr)-type guanine nucleotide-binding (G) domain profile. | 506 | 738 | 49.791542 | IPR000795 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 1431 | 1445 | - | IPR019775 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 283 | 302 | - | IPR001876 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 1473 | 1487 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 1473 | 1487 | 7.5E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 1389 | 1403 | 7.5E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 1431 | 1445 | 7.5E-7 | IPR020472 |
| PRINTS | PR00315 | GTP-binding elongation factor signature | 605 | 616 | 3.1E-17 | IPR000795 |
| PRINTS | PR00315 | GTP-binding elongation factor signature | 569 | 577 | 3.1E-17 | IPR000795 |
| PRINTS | PR00315 | GTP-binding elongation factor signature | 651 | 660 | 3.1E-17 | IPR000795 |
| PRINTS | PR00315 | GTP-binding elongation factor signature | 589 | 599 | 3.1E-17 | IPR000795 |
| PRINTS | PR00315 | GTP-binding elongation factor signature | 510 | 523 | 3.1E-17 | IPR000795 |
| Hamap | MF_03022 | Katanin p80 WD40 repeat-containing subunit B1 [KATNB1]. | 1274 | 2190 | 20.605078 | IPR026962 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 247 | 273 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1033 | 1059 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1713 | 1866 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 38 | 53 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1192 | 1231 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1590 | 1669 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1738 | 1752 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 174 | 194 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1971 | 2017 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1174 | 1265 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 31 | 62 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G10630.3 | - | 1.16E-193 |
| RefSeq | XP_025825529.1 | HBS1-like protein isoform X2 [Panicum hallii] | 0 |
| Q2KHZ2 | HBS1-like protein OS=Bos taurus OX=9913 GN=HBS1L PE=2 SV=1 | 6.51E-99 | |
| TrEMBL | A0A3L6FQC7 | Katanin p80 WD40 repeat-containing subunit B1 homolog OS=Zea mays OX=4577 GN=At5g23430_3 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology