Basic Information
Locus ID:
CH09.3218
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
PA domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH09 | 38007585 | 38010129 | + | CH09.3218 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.99 | 34,286.94 Da | 76.94 | 67.97 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | G3DSA:3.50.30.30 | - | 12 | 95 | 3.8E-7 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 116 | 130 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 116 | 162 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 137 | 162 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G71980.1 | Protease-associated (PA) RING/U-box zinc finger family protein. | 9.34E-21 |
| RefSeq | XP_004959946.1 | receptor homology region, transmembrane domain- and RING domain-containing protein 1 isoform X1 [Setaria italica] | 1.21E-132 |
| Q10R93 | Receptor homology region, transmembrane domain- and RING domain-containing protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0167500 PE=2 SV=1 | 8.03E-81 | |
| TrEMBL | A0A1E5VCF5 | Receptor homology region, transmembrane domain-and RING domain-containing protein 1 (Fragment) OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0016154 PE=4 SV=1 | 3.02E-140 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology