Basic Information
Locus ID:
CH09.3005
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Cupin superfamily protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH09 | 36573321 | 36581257 | - | CH09.3005 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.13 | 147,417.81 Da | 49.79 | 82.54 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00120 | Glutamine synthetase, catalytic domain | 1090 | 1219 | 1.9E-10 | IPR008146 |
| Pfam | PF08007 | Cupin superfamily protein | 501 | 601 | 7.8E-20 | IPR003347 |
| Pfam | PF03951 | Glutamine synthetase, beta-Grasp domain | 986 | 1062 | 1.4E-10 | IPR008147 |
| SUPERFAMILY | SSF55931 | Glutamine synthetase/guanido kinase | 1069 | 1317 | 4.02E-66 | IPR014746 |
| SUPERFAMILY | SSF48371 | ARM repeat | 91 | 766 | 4.48E-8 | IPR016024 |
| SUPERFAMILY | SSF54368 | Glutamine synthetase, N-terminal domain | 982 | 1067 | 1.2E-18 | IPR036651 |
| SUPERFAMILY | SSF51197 | Clavaminate synthase-like | 458 | 612 | 2.47E-25 | - |
| Gene3D | G3DSA:3.10.20.70 | - | 966 | 1068 | 6.2E-42 | IPR036651 |
| Gene3D | G3DSA:3.30.590.10 | Glutamine synthetase/guanido kinase, catalytic domain | 1069 | 1321 | 1.0E-97 | - |
| Gene3D | G3DSA:2.60.120.650 | Cupin | 403 | 606 | 2.0E-36 | - |
| SMART | SM01230 | Gln_synt_C_2 | 1068 | 1316 | 8.9E-58 | IPR008146 |
| ProSiteProfiles | PS51184 | JmjC domain profile. | 472 | 621 | 17.767643 | IPR003347 |
| ProSitePatterns | PS00180 | Glutamine synthetase signature 1. | 1020 | 1037 | - | IPR027302 |
| ProSitePatterns | PS00181 | Glutamine synthetase putative ATP-binding region signature. | 1202 | 1218 | - | IPR027303 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 851 | 901 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 65 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 44 | 58 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 18 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 853 | 868 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G35630.1 | glutamine synthetase 2. chloroplastic glutamine synthetase | 6.2E-241 |
| RefSeq | XP_004963393.1 | uncharacterized protein LOC101785360 [Setaria italica] | 0 |
| P14655 | Glutamine synthetase, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=GLN2 PE=1 SV=1 | 1.16E-285 | |
| TrEMBL | A0A0D9WAM5 | Glutamine synthetase OS=Leersia perrieri OX=77586 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg33161 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_11116 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah015626 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g190100 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg25273, Sbi_jg9125 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg19470 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011220 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl43043, Sgl43044, Sgl43051, Sgl47863 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000044437 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.8BG0014390 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30262610 |
| Apiaceae | Apium graveolens | 2 | Ag2G02681, Ag2G02682 |
| Arecaceae | Cocos nucifera | 1 | contig69644988G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103715626 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.653.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri7G32488 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G2040 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G2231 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g06440 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0046s00021.v1.0, Dusal.2808s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g11440 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.540 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb6G31987, Lb6G31988 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.2582, BH09.2806, CH09.3005 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_4BG0331590 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0202340.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_047058 |
| Poaceae | Oryza coarctata | 2 | Oco07G018070, Oco08G017430 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g56405.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G267400 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr23G001940, Chr26G017380 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G845700 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC2AG070390, gene_TRIDC2BG076080 ... |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G500300.1, TraesCS2B02G528200.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb432590_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-6086 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g22139 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG08.1555, evm.TU.LG22.448, evm.TU.LG22.449 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc03g15040, gene.Posoc03g15050 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.1999 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-25508 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-15038 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-4774 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.1159 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00001398 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-14228 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-21002 |
| Salicaceae | Populus euphratica | 3 | populus_peu05791, populus_peu11162, populus_peu11163 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_12508 |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G0444 |
| Zosteraceae | Zostera marina | 1 | Zosma03g00200.v3.1 |